View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6380_low_8 (Length: 287)
Name: NF6380_low_8
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6380_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 14518301 - 14518162
Alignment:
| Q |
3 |
aggaggagcacagaatcgaactctagacaagaattggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggatttttcgaaagaatggaaa |
102 |
Q |
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| T |
14518301 |
aggaggagaatagaatcgaactctagacaagagttggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggattcttcgaaagaatggaaa |
14518202 |
T |
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| Q |
103 |
agatgagtgtatgtatctttatattcgcaaagtagtttcc |
142 |
Q |
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| T |
14518201 |
agatgagtgtatgtatctttatattcgcaaagtagtttcc |
14518162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 14535806 - 14535700
Alignment:
| Q |
3 |
aggaggagcacagaatcgaactctagacaagaattggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggatttttcgaaagaatggaaa |
102 |
Q |
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| T |
14535806 |
aggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaacaaaaactaagaccaaaatgggattttttgaaagaatggaaa |
14535707 |
T |
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| Q |
103 |
agatgag |
109 |
Q |
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| T |
14535706 |
aggtgag |
14535700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 14518096 - 14518037
Alignment:
| Q |
208 |
acatcatacattcctctctagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
267 |
Q |
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| T |
14518096 |
acatcatacattcctctccagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
14518037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 14531148 - 14531089
Alignment:
| Q |
208 |
acatcatacattcctctctagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
267 |
Q |
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| T |
14531148 |
acatcatatattcctctccagggaaaacaacgcgccaaacgatctgtgttgggttcctct |
14531089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 14535655 - 14535596
Alignment:
| Q |
208 |
acatcatacattcctctctagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
267 |
Q |
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| T |
14535655 |
acatcatatattcctcttcagggaaaacaacgcgccaaacgatctgtgttgggttcctct |
14535596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 37338146 - 37338228
Alignment:
| Q |
28 |
gacaagaattggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggatttttcgaaagaatggaaaagatgagt |
110 |
Q |
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| T |
37338146 |
gacaggaattggtggtgaactgccataaaggaacaaaaactaaaaccaaaatgggattcttcgaaagaatgcaaaaggtgagt |
37338228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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