View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6381_high_1 (Length: 567)
Name: NF6381_high_1
Description: NF6381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6381_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 42113607 - 42114161
Alignment:
| Q |
1 |
cactttcaccctctctagatattactcaacaagccaatctctgcaaaatccacattgttttttctcttggattctttgaaccagcttttctcttaacgtt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113607 |
cactttcaccctccctagatattactcaacaagccaatctctgcaaaatccacattgttttttctcttggattctttgaaccagcttttctcttaacgtt |
42113706 |
T |
|
| Q |
101 |
gttgtttctcctcaacgcttccatcagaaaaaagacaccaaacgacggttgggctgtaacctttgtgtttagcacgtgtcttccattaggtattcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113707 |
gttgtttctcctcaacgcttccatcagaaaaaagacaccaaacgacggttgggctgtaacctttgtgtttagcacgtgtcttccattaggtattcttcaa |
42113806 |
T |
|
| Q |
201 |
ggtttacttgtctatttcaatccattggaacatcgtgttccggcgttgttacgacaaacatttgttattctagaagacgacaccgttctctgcgcttacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42113807 |
ggtttacttgtctatttcaatccattggaacatcgtgttccggcgttgttacgacaaacatttgttattctagaagacgacaccgttctctgtgcttacc |
42113906 |
T |
|
| Q |
301 |
cgttcttaaacagcgttgtgttcgccgcattcgctgctgcatattgtgcatggttattgttctcatgttggaaggttttatcattggtgattaacaaagg |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113907 |
cgttcttaaacagcgttgtgttcgcggcattctctgctgcatattgtgcatggttattgttctcatgttggaaggttttatcattggtgattaacaaagg |
42114006 |
T |
|
| Q |
401 |
attaaggattcgaatctacgcattgggttctgtcgttttggtggctcttcctcttcaggttgtatcgttggccttcaccgttctatggagtcctgaagat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42114007 |
attaaggattcgaatctacgcattgggttctgtcgttttggtggctcttcctcttcaggttgtgtcgttggccttcaccgttctatggagtcctgaagat |
42114106 |
T |
|
| Q |
501 |
gatatttacggcgtcgtttcattggtggtgtttttctgtgcttttttctgtgctg |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42114107 |
gatatttacggcgtcgtttcattggtggtgtttttctgtgcttttttctgtgctg |
42114161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University