View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6381_low_2 (Length: 397)
Name: NF6381_low_2
Description: NF6381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6381_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 4 - 397
Target Start/End: Complemental strand, 28293822 - 28293425
Alignment:
| Q |
4 |
tcatatttctcagaagataaagatcatcttactgcagtatattaaaattaatgtacacacaacaaaagcactttattttatatattgttccaaccatgac |
103 |
Q |
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| T |
28293822 |
tcatatttctcagaagataaagatcatcttactgcagtatattaaaattaatgtacacacaacaaa-gcactttattttatatattgttccaaccatgac |
28293724 |
T |
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| Q |
104 |
agtacataattaaaagttagatacatcatttgtgcatctgtcataccctagacatcttggaaagacagtttgatacacacaattcaagtatctatttact |
203 |
Q |
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| T |
28293723 |
agtacataattaaaagttagatacatcatttgtgcatctgtcataccctagacatcttggaaagacagtttgatacacacaattcaaatatctatttact |
28293624 |
T |
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| Q |
204 |
aataacataatcagttaatcactgataagtagaaacatcaattgagcattttgaagtaaaatcatatatttctaagcaggcaagaaagctcttccaggct |
303 |
Q |
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| T |
28293623 |
aataacataatcagttaatcactgataagtagacacatcaattgagcattttgaagtaaaatcatatatttctaagcaggcaagaaagctcttccaggct |
28293524 |
T |
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| Q |
304 |
gacgattggccaaaggtccatggcacccaagaacctgaaaaatacagg--aattttcagtcaataa---catccatccaaaaatatggtgaaatctcca |
397 |
Q |
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| T |
28293523 |
gacgattggccaaaggtccatggcacccaagaacctgaaaaatacaggaaaattttcagtcaataacctcatccatccaaaaatatggtgaaatctcca |
28293425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 43070778 - 43070719
Alignment:
| Q |
287 |
gaaagctcttccaggctgacgattggccaaaggtccatggcacccaagaacctgaaaaat |
346 |
Q |
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| T |
43070778 |
gaaagctcttccgggttgacggttggccaatggtccatggcatccaagaagctgcaaaat |
43070719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 39034567 - 39034625
Alignment:
| Q |
288 |
aaagctcttccaggctgacgattggccaaaggtccatggcacccaagaacctgaaaaat |
346 |
Q |
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| T |
39034567 |
aaagctcttccaggttgacggttggccaatggtccatggcatccaagaagctgaaaaat |
39034625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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