View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6381_low_3 (Length: 260)
Name: NF6381_low_3
Description: NF6381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6381_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 20130617 - 20130395
Alignment:
| Q |
20 |
ccttacgctctcggataaatataccatgggtggtatcttattctatttatatgttctcatttgcttgcctgtcactctctatgcacttgttcagtttcgg |
119 |
Q |
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| T |
20130617 |
ccttacgctctcggataaatataccatgggtggtatcttattctatttatatgttctcatttgcttgcctgtcactctctatgcacttgttcagtttcgg |
20130518 |
T |
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| Q |
120 |
ttatatgttgatcttgttaaagttctttggaagaaggtgccaccaccaagtattaagggtgttaagttgtagaagtgtttattttattgtattgctgtgt |
219 |
Q |
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| T |
20130517 |
ttatatgttgatcttgttaaagttctttggaagaaggtgccaccaccaagtattaagggtgttaagttgtagaagtgtttatttaattgtattgctgtgt |
20130418 |
T |
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| Q |
220 |
ggattgaaacttatgagtttggt |
242 |
Q |
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| T |
20130417 |
ggattgaaacttatgagtttggt |
20130395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 20103384 - 20103175
Alignment:
| Q |
33 |
gataaatataccatgggtggtatcttattctatttatatgttctcatttgcttgcctgtcactctctatgcacttgttcagtttcggttatatgttgatc |
132 |
Q |
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| T |
20103384 |
gataaatataccaagagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgagcattttccgttatatattgatc |
20103285 |
T |
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| Q |
133 |
ttgttaaagttctttggaagaaggtgccaccaccaagtattaagggtgttaagttgtagaagtgtttattttattgtattgctgtgtggattgaaactta |
232 |
Q |
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| T |
20103284 |
ttctcaaagttattttgaagaaggtgccaccaccaagtatcaagggtgttaagttgtagaggtgtttattttattgtattgctttgtggattgaaactaa |
20103185 |
T |
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| Q |
233 |
tgagtttggt |
242 |
Q |
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| T |
20103184 |
tgagtttggt |
20103175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 20079067 - 20078858
Alignment:
| Q |
33 |
gataaatataccatgggtggtatcttattctatttatatgttctcatttgcttgcctgtcactctctatgcacttgttcagtttcggttatatgttgatc |
132 |
Q |
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| T |
20079067 |
gataaatataccaagagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatggagttgtccagtttccattatatcttgatc |
20078968 |
T |
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| Q |
133 |
ttgttaaagttctttggaagaaggtgccaccaccaagtattaagggtgttaagttgtagaagtgtttattttattgtattgctgtgtggattgaaactta |
232 |
Q |
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| T |
20078967 |
ttgtcaaagttacttggaggaaggtgccaccaccaagtatcaagggtgttaagctgtaaaggtgtttattttattgtattgctttgtggattgaaactca |
20078868 |
T |
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| Q |
233 |
tgagtttggt |
242 |
Q |
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| T |
20078867 |
tgagtttggt |
20078858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 19904158 - 19904194
Alignment:
| Q |
206 |
ttgtattgctgtgtggattgaaacttatgagtttggt |
242 |
Q |
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| T |
19904158 |
ttgtattgctgtgtggattgaaacttatgagtttggt |
19904194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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