View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_high_11 (Length: 251)
Name: NF6382_high_11
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2923971 - 2924212
Alignment:
| Q |
1 |
cacatgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2923971 |
cacatgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcat |
2924070 |
T |
|
| Q |
101 |
gaagtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
2924071 |
gaagtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcgcttacatcaggcaaattcgc |
2924170 |
T |
|
| Q |
201 |
tctctcgaagcagtcaataaccgttcttctaatcttctgtgc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2924171 |
tctctcgaagcagtcaataaccgttcttctaatcttctgtgc |
2924212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36126913 - 36126672
Alignment:
| Q |
1 |
cacatgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcat |
100 |
Q |
| |
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||||||||||| |||||| ||||||| |||| || || ||||| ||||||||||| |||||||| ||||| | ||| |||||||| |||| || |||| |
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| T |
36126913 |
cacatgctcaagatatgacctccagcctccaagagcgtgattttaactaaatcttttaccccagggtataatttgaccaaatcctcactgacaaaatcat |
36126814 |
T |
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| Q |
101 |
gaagtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgc |
200 |
Q |
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|||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| | ||||| ||||| ||| ||||||| | || |
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| T |
36126813 |
gaagtgcggctgcaaactctactccagttggaccacctccaacaatagcaaaatgaagaattctctttctctcttcatcactcacactaggcaaacttgc |
36126714 |
T |
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| Q |
201 |
tctctcgaagcagtcaataaccgttcttctaatcttctgtgc |
242 |
Q |
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|||||| |||| |||||| || |||||||||||||| ||||| |
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| T |
36126713 |
tctctcaaagctgtcaattacagttcttctaatcttttgtgc |
36126672 |
T |
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