View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_high_12 (Length: 245)
Name: NF6382_high_12
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 11024770 - 11024554
Alignment:
| Q |
13 |
aaaatcattatagccatgtttcaagtagttgaaatgggattctgaaagattaaagttgtggatatgtttgtaaagacaactttgtggatcagatagttga |
112 |
Q |
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|||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11024770 |
aaaatcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttga |
11024671 |
T |
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| Q |
113 |
atagtttggtgtctgtagtcaatgttcttaacattgagtttcactttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatc |
212 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||||| || ||||| ||||| |||| ||||||||||||||||| |
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| T |
11024670 |
atagtttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatc |
11024571 |
T |
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| Q |
213 |
ctgcatagccacacatg |
229 |
Q |
| |
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||| ||||||||||||| |
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| T |
11024570 |
ctgaatagccacacatg |
11024554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 11000874 - 11001080
Alignment:
| Q |
17 |
tcattatagccatgtttcaagtagttgaaatgggattctgaaagattaaagttgtggatatgtttgtaaagacaactttgtggatcagatagttgaatag |
116 |
Q |
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|||| |||| |||||||||||||||||||||| |||||||||||||| | ||||| |||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
11000874 |
tcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattgaggttgttgatatgtttgcaaagacaactttgtggatcggatagttgaatag |
11000973 |
T |
|
| Q |
117 |
tttggtgtctgtagtcaatgttcttaacattgagtttcactttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatcctgc |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||| |||||||||||||||||||| || | |
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| T |
11000974 |
tttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaagccagg |
11001073 |
T |
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| Q |
217 |
atagcca |
223 |
Q |
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||||||| |
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| T |
11001074 |
atagcca |
11001080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 11039835 - 11039625
Alignment:
| Q |
13 |
aaaatcattatagccatgtttcaagtagttgaaatgggattctgaaagattaaagttgtggatatgtttgtaaagacaactttgtggatcagatagttga |
112 |
Q |
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|||||||| ||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||| | |
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| T |
11039835 |
aaaatcatcgtagtcatgtttcaagtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttca |
11039736 |
T |
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| Q |
113 |
atagtttggtgtctgtagtcaatgttcttaacattgagtttcactttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatc |
212 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
11039735 |
atggtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaat |
11039636 |
T |
|
| Q |
213 |
ctgcatagcca |
223 |
Q |
| |
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||| ||||||| |
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| T |
11039635 |
ctggatagcca |
11039625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 10990320 - 10990110
Alignment:
| Q |
13 |
aaaatcattatagccatgtttcaagtagttgaaatgggattctgaaagattaaagttgtggatatgtttgtaaagacaactttgtggatcagatagttga |
112 |
Q |
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|||||| | |||| ||| ||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||| | |
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| T |
10990320 |
aaaatcttcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttca |
10990221 |
T |
|
| Q |
113 |
atagtttggtgtctgtagtcaatgttcttaacattgagtttcactttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatc |
212 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
10990220 |
atggtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaat |
10990121 |
T |
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| Q |
213 |
ctgcatagcca |
223 |
Q |
| |
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||| ||||||| |
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| T |
10990120 |
ctggatagcca |
10990110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 10929169 - 10929002
Alignment:
| Q |
55 |
tgaaagattaaagttgtggatatgtttgtaaagacaactttgtggatcagatagttgaatagtttggtgtctgtagtcaatgttcttaacattgagtttc |
154 |
Q |
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||||||||||| |||||||| ||| |||| || |||| ||||||||| ||||||| ||||||||||| | ||||||| |||||||| || ||||||||| |
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| T |
10929169 |
tgaaagattaaggttgtggaactgtatgtataggcaaccttgtggatcggatagttcaatagtttggtttgtgtagtcgatgttcttgaccttgagtttc |
10929070 |
T |
|
| Q |
155 |
actttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatcctgcatagcc |
222 |
Q |
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||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||| |||||| |
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| T |
10929069 |
actttatgagggagttcaatcatagtttccttatttgatgaacaaaataaatcaaaacctggatagcc |
10929002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 10906605 - 10906495
Alignment:
| Q |
113 |
atagtttggtgtctgtagtcaatgttcttaacattgagtttcactttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatc |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
10906605 |
atagtttggtgtctgtagtcaatgttcttaacattgagtttcatcgagtgagggagttcaatcattgtttcgttattcgatgaacaaaataactcaaaac |
10906506 |
T |
|
| Q |
213 |
ctgcatagcca |
223 |
Q |
| |
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||| ||||||| |
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|
| T |
10906505 |
ctggatagcca |
10906495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 10976994 - 10976883
Alignment:
| Q |
118 |
ttggtgtctgtagtcaatgttcttaacattgagtttcactttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatcctgca |
217 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||| ||||||||||| |||| | |
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| T |
10976994 |
ttggtgtctatagtcaatgttcttaacattgagtttcaccgagtgagggagttcaatcgttgtttcgttattcaatgaacagaataactcaaaacctgga |
10976895 |
T |
|
| Q |
218 |
tagccacacatg |
229 |
Q |
| |
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|||||||||||| |
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|
| T |
10976894 |
tagccacacatg |
10976883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 10995360 - 10995443
Alignment:
| Q |
143 |
acattgagtttcactttgtgagggagttcaatcatcgtttcgttattcgatgaacaaaataactcaaatcctgcatagccacaca |
227 |
Q |
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| T |
10995360 |
acatttagtttcactttgtgagggagttca-tcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacaca |
10995443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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