View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_high_16 (Length: 229)
Name: NF6382_high_16
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 39077486 - 39077277
Alignment:
| Q |
1 |
atagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttc |
100 |
Q |
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| T |
39077486 |
atagttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttc |
39077387 |
T |
|
| Q |
101 |
gattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077386 |
gattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggctaa |
39077287 |
T |
|
| Q |
201 |
gtctgccatt |
210 |
Q |
| |
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|||||||||| |
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| T |
39077286 |
gtctgccatt |
39077277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 30768437 - 30768303
Alignment:
| Q |
76 |
aaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctg |
175 |
Q |
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||||||||||| ||||| | |||||| | |||||||||||||| || ||||||| ||||||||||| || ||||||||||||||||| || ||||| | |
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| T |
30768437 |
aaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcag |
30768338 |
T |
|
| Q |
176 |
ttgattggcttatcaaaaaggctaagtctgccatt |
210 |
Q |
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| T |
30768337 |
tggattggctcatcaagaaagcaaagtcttccatt |
30768303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 22327973 - 22328106
Alignment:
| Q |
73 |
gcgaaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaag |
172 |
Q |
| |
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||||||||||| ||||| || ||||| ||| | ||||| ||||| || ||||||||||| || || ||||| ||||||||||||||| | || ||||||| |
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| T |
22327973 |
gcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaag |
22328072 |
T |
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| Q |
173 |
ctgttgattggcttatcaaaaaggctaagtctgc |
206 |
Q |
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| || |||||||| || ||||| ||||| ||||| |
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| T |
22328073 |
cagtcgattggctcattaaaaaagctaaatctgc |
22328106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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