View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_high_3 (Length: 418)
Name: NF6382_high_3
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 42812793 - 42812408
Alignment:
| Q |
10 |
atgaaggggagaaaagtggaagaactagttgggacacgctgattatagccgaaactcaaactataactatatccacacataactaactgatagtagaaga |
109 |
Q |
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| T |
42812793 |
atgaaggggagaaaagtcgaagaactagttgggacacgctgattatagccgaaactcaaactataactatatccacacataactgagtga-----gttaa |
42812699 |
T |
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| Q |
110 |
tatccaaaatggtgcacccagtagcagaagccaacgatcatagccccttcggaaccctaactcctgaagaattctacactcgccactcagtgactcacac |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42812698 |
tatccaaaatggtgcacccaatagcagaagccaacgatcatagccccttcggaaccctaactcctgaagaattctacactcgccactcagtgactcacgc |
42812599 |
T |
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| Q |
210 |
ctccgagttcataaccaactcaagaggtctcaaactcttcactcagtggtggatccctaatcctccaactaaacttatcggaaccctcgccgtcgtccac |
309 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
42812598 |
ctccgagttcataaccaactcaagaggtcttaaactcttcactcagtggtggatccctaatcctccaaccaaactcatcggaaccctcgccgtcgtccac |
42812499 |
T |
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| Q |
310 |
ggctacaccggcgaatccagctggactgtccaactctccgccgtctactttgctaaagccggattcgccacttgcgctattgatcatcaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42812498 |
ggctacaccggcgaatccagctggactgtccaactctccgccgtctactttgctaaagccggattcgccacttgcgccattgatcatcaag |
42812408 |
T |
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