View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_high_5 (Length: 347)
Name: NF6382_high_5
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 50954245 - 50953906
Alignment:
| Q |
1 |
ctgaatgccttccctgggtgtggtttatatttccagcaaaactgaagtttgttttaatgtttgatgtcggtgttgtgtgtaaattagattattcactcga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50954245 |
ctgaatgccttccctgggtgtggtttatatttccagcaaaactgaagtttgttttaatgtttgctgtcggtgttgtgtgtaaattagattattcactcga |
50954146 |
T |
|
| Q |
101 |
aagatcagggttttaaatgtttgttcaaaggagcaggtattgttannnnnnnnnnnn-----ggggggagtatggattggttggttgcaaatctcattga |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |
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| T |
50954145 |
aagatcagggttttaaatgtttgttcaaaggagcaggtattgtttatttttatttttttggggggggtagtatggattggttggttgcaattctcattga |
50954046 |
T |
|
| Q |
196 |
tatgtatatttatttatttattcaattggggaaaagagaagggtactgtgtaccatgtatttcagctttgagagctgaggcatcatgtcacgaactaaag |
295 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50954045 |
tatgtatatttatttatttattcaattggg--aaagagaagggtactgtgtaccatgtatttcagctttgagagctgaggcatcatgtcacgagctaaag |
50953948 |
T |
|
| Q |
296 |
tgtattgtataacaatttttctgatgagttaaaggttctgtg |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
50953947 |
tgtattgtataacaatttttctgatgagttaaaggttctgtg |
50953906 |
T |
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