View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6382_high_7 (Length: 329)
Name: NF6382_high_7
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 91 - 316
Target Start/End: Original strand, 55060283 - 55060511
Alignment:
| Q |
91 |
ccacaccataataacaagaaccaatagttggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaattttagatg- |
189 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
55060283 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaacaacctcgcaattttagatga |
55060382 |
T |
|
| Q |
190 |
--ttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacagcacaaaccggcgaaagcttcaacttcacaccaaaatctcta |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55060383 |
tgttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacaacacgaaccggcgaaagcttcaacttcacaccaaaatctcta |
55060482 |
T |
|
| Q |
288 |
atcttctgtgatggctcaatgaaagttct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
55060483 |
atcttctgtgatggctcaatgaaagttct |
55060511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 55060158 - 55060243
Alignment:
| Q |
11 |
atcatcacccaacaacttcttcaaactatggataggtagaaaagcaagggaatcacaaccaataaattccttcatcccagccacac |
96 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
55060158 |
atcatcacccaacaacttcttcaaactatccataggtagaaaagcaagggaatcacaacgaataaattccttaatcccagccacac |
55060243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 91 - 313
Target Start/End: Original strand, 27356468 - 27356693
Alignment:
| Q |
91 |
ccacaccataataacaagaaccaatagttggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaattttaga--- |
187 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||| | ||||| || | | |||||||||| || || |
|
|
| T |
27356468 |
ccacaccatagtaacaagaaccaataattggtggacttgcaattctcatgtgaacttcttttgcacctgcttccttaagcaacctcacaatcttggacga |
27356567 |
T |
|
| Q |
188 |
tgttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacagcacaaaccggcgaaagcttcaacttcacaccaaaatctcta |
287 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || ||||||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
27356568 |
tgttgttcccctcacaattgagtcatcaacgacaacaacccttttaccttcaagcacagcacgaacaggcgaaagcttcaacttcacaccaaaatcccta |
27356667 |
T |
|
| Q |
288 |
atcttctgtgatggctcaatgaaagt |
313 |
Q |
| |
|
|| ||||| ||||||||||||||||| |
|
|
| T |
27356668 |
attttctgagatggctcaatgaaagt |
27356693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University