View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6382_low_1 (Length: 656)
Name: NF6382_low_1
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_low_1 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 20 - 647
Target Start/End: Complemental strand, 28609059 - 28608432
Alignment:
| Q |
20 |
gtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28609059 |
gtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgc |
28608960 |
T |
|
| Q |
120 |
gatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28608959 |
gatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgc |
28608860 |
T |
|
| Q |
220 |
actttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgctccttcaggacttagttgtttgtggaatggaaggagaatcaag |
319 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
28608859 |
actttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaag |
28608760 |
T |
|
| Q |
320 |
cttgtatgtttttcgttaactaaatggtatatgtcttcctgaatggttgcatactcggacacaacatttaacgtttctactctgatagcatcatatgcct |
419 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28608759 |
cttgtatgtttttcgttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcct |
28608660 |
T |
|
| Q |
420 |
ctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgaga |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28608659 |
ctctgagtgcttcaaatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccagattggccactaggcttctccatatgaga |
28608560 |
T |
|
| Q |
520 |
agcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggcta |
619 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608559 |
agcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggcta |
28608460 |
T |
|
| Q |
620 |
ataacccctacagcctgacgagtattat |
647 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
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| T |
28608459 |
ataacccctacagcttgacgagtattat |
28608432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 645
Target Start/End: Original strand, 437845 - 438470
Alignment:
| Q |
20 |
gtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgc |
119 |
Q |
| |
|
||||| |||||| |||| ||| |||||| |||||||||||||||| | ||||||||||| | |||||| ||| |||||||| |||||||| ||||||| |
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| T |
437845 |
gtgtctactatttcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgc |
437944 |
T |
|
| Q |
120 |
gatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgc |
219 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||| ||| || ||||||| |||||| ||||||||||| |
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| T |
437945 |
gatcatcaggaccaccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgc |
438044 |
T |
|
| Q |
220 |
actttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgctccttcaggacttagttgtttgtggaatggaaggagaatcaag |
319 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||| || ||||||||| | ||| ||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
438045 |
actttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaa |
438144 |
T |
|
| Q |
320 |
cttgtatgtttttcgttaactaaatggtatatgtcttcctgaatggttgcatactcggacacaacatttaacgtttctactctgatagcatcatatgcct |
419 |
Q |
| |
|
|||||| |||||| ||| | | | |||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||| |||||||||||||||| |
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|
| T |
438145 |
cttgtacatttttcattagccgagttgtatatatcttcgtgaatggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcct |
438244 |
T |
|
| Q |
420 |
ctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgaga |
519 |
Q |
| |
|
|| ||| ||||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || ||||||||||| |
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|
| T |
438245 |
ctttgaatgcttcaaaggtattggtaatgctttctaactctagctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgaga |
438344 |
T |
|
| Q |
520 |
agcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggcta |
619 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
438345 |
agcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggcta |
438444 |
T |
|
| Q |
620 |
ataacccctacagcctgacgagtatt |
645 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
438445 |
ataactcctacggcctgacgagtatt |
438470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 42 - 647
Target Start/End: Complemental strand, 13660408 - 13659803
Alignment:
| Q |
42 |
caaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaa |
141 |
Q |
| |
|
||||||||||||||||||||| | | | |||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||| |
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| T |
13660408 |
caaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaa |
13660309 |
T |
|
| Q |
142 |
gatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttg |
241 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||||| ||| |
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|
| T |
13660308 |
gatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggttt |
13660209 |
T |
|
| Q |
242 |
atatctttgaacgcaacatcagttgtttcaaatgctccttcaggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaacta |
341 |
Q |
| |
|
||||||||| | |||||| ||||||||| | ||| ||| | ||||| ||||| ||||||||||| | ||||| |||||| ||||||| ||| | |
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|
| T |
13660208 |
atatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcag |
13660109 |
T |
|
| Q |
342 |
aatggtatatgtcttcctgaatggttgcatactcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttatt |
441 |
Q |
| |
|
| | |||||||| || |||||||||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||| |||| |
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|
| T |
13660108 |
agttatatatgtcctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtatt |
13660009 |
T |
|
| Q |
442 |
atcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgt |
541 |
Q |
| |
|
|| ||| |||||| ||||| |||||||| ||||||||||| | || || |||| ||||||||| |||||||||| ||||||| ||||||| |||| |
|
|
| T |
13660008 |
attaatgctttcttgctctacttgggatcttgtaagattttgcgctccaggttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgt |
13659909 |
T |
|
| Q |
542 |
ccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgag |
641 |
Q |
| |
|
|| |||||||| |||||||||||| |||| ||| |||||||||| |||||| |||||||||||||||| |||||| ||||||||| |||||| |||| |
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| T |
13659908 |
cctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaagattcaacgaggctgataacccctgtagcctggcgag |
13659809 |
T |
|
| Q |
642 |
tattat |
647 |
Q |
| |
|
||||| |
|
|
| T |
13659808 |
cattat |
13659803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 91 - 645
Target Start/End: Complemental strand, 13652859 - 13652305
Alignment:
| Q |
91 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
190 |
Q |
| |
|
|||||||||||| |||| ||| ||||| | |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||||| |
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|
| T |
13652859 |
catcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacga |
13652760 |
T |
|
| Q |
191 |
tcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgctccttcaggactta |
290 |
Q |
| |
|
|||||||| | |||||| |||||||||||| ||||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||| ||| | ||||| |
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|
| T |
13652759 |
tcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
13652660 |
T |
|
| Q |
291 |
gttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaatggtatatgtcttcctgaatggttgcatactcggacacaacatttaa |
390 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||| |||||||| ||| || ||| |||||||| || |||||||||||||| |||||||||||||| |
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|
| T |
13652659 |
agtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaa |
13652560 |
T |
|
| Q |
391 |
cgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttcta |
490 |
Q |
| |
|
||| ||||| | |||||| || ||||||| | |||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || | |
|
|
| T |
13652559 |
ggttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctcca |
13652460 |
T |
|
| Q |
491 |
gattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtc |
590 |
Q |
| |
|
| ||| |||||||||| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| || |
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| T |
13652459 |
ggttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattc |
13652360 |
T |
|
| Q |
591 |
tagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtatt |
645 |
Q |
| |
|
|||||||||||||||| | ||||||| | |||||||||| ||| || |||||||| |
|
|
| T |
13652359 |
tagtggcattgaaagactgaatgaggttgataacccctatagcgtggcgagtatt |
13652305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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