View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_low_14 (Length: 238)
Name: NF6382_low_14
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 5058397 - 5058611
Alignment:
| Q |
8 |
atcatcatttaggaaaccttgcattagcctctgcagataaaagttccaatgccaaacactctccaaacattgtctaccctccaccaccaccaaaccaatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5058397 |
atcatcatttaggaaaccttgcattagcctctgcagataaaagttccaatgccaaacactctccaaacattgtctaccctccaccaccaccaaaccaatg |
5058496 |
T |
|
| Q |
108 |
gttagttcctgtcatgtctccatctgaaggtcttgtatataagccaatcattggaccatgccctccaaattctggtggcatcatgacaccgttatacggt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5058497 |
gttagttcctgtcatgtctccatctgaaggtcttgtatataagccaatcattggaccatgccctccaaattctggcggcatcatgacaccgttatacggt |
5058596 |
T |
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| Q |
208 |
ggttgcagtccaatg |
222 |
Q |
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||||||||||||||| |
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| T |
5058597 |
ggttgcagtccaatg |
5058611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 5178748 - 5178634
Alignment:
| Q |
8 |
atcatcatttaggaaaccttgcattagcctctgcagataaaagttccaatgccaaacactctccaaacattgtctaccctccaccaccaccaaaccaatg |
107 |
Q |
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||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||| |
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| T |
5178748 |
atcatcatttagggatccttgcatcagcctctgcagataaaatttccaatgccaaacactctccaagcattgtctatcctccgccactaccaaaccaatg |
5178649 |
T |
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| Q |
108 |
gttagttcctgtcat |
122 |
Q |
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||| ||||||||||| |
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| T |
5178648 |
gtttgttcctgtcat |
5178634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 5178635 - 5178556
Alignment:
| Q |
144 |
atataagccaatcattggaccatgccctccaaattctggtggcatcatgacacc-gttatacggtggttgcagtccaatg |
222 |
Q |
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|||||||||||||||| |||| |||||| ||||| | |||||| |||||||||| ||||||| || ||||||| ||||| |
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| T |
5178635 |
atataagccaatcattagaccttgcccttcaaatgccggtggcttcatgacaccatttatacgatgcttgcagtgcaatg |
5178556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 5175424 - 5175312
Alignment:
| Q |
10 |
catcatttaggaaaccttgcattagcctctgcagataaaagttccaatgccaaacactctccaaacattgtctaccctccaccaccaccaaaccaatggt |
109 |
Q |
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||||||||||||| ||||||| ||||||||||||||||| |||||||||| || | ||||||| |||||||| | || |||| |||||||||||||| |
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| T |
5175424 |
catcatttaggaattcttgcatcagcctctgcagataaaaattccaatgccgaatagtctccaagaattgtctatcatctgccactaccaaaccaatggt |
5175325 |
T |
|
| Q |
110 |
tagttcctgtcat |
122 |
Q |
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| T |
5175324 |
ttgttcctgtcat |
5175312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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