View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_low_15 (Length: 237)
Name: NF6382_low_15
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2923915 - 2923694
Alignment:
| Q |
1 |
atagtttgtctcatttgatgtgtccttttgctcttttcgtataggtttgataaaaggataacagcttttgccgaagacaagtttcaaagagatgggattg |
100 |
Q |
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| T |
2923915 |
atagtttgtctcatttgatgtgtccttttgctcttttcgtataggtttgataaaaggataacagcttttgccgaagacaagtttcaaagagatgggattg |
2923816 |
T |
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| Q |
101 |
atgtgaaaacaggatccatggttgtgaaggtagatgggaaagaaatttccactaaagagctgaaaaatggaggaaagattactacaattccatatggaat |
200 |
Q |
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| T |
2923815 |
atgtgaaaacaggatccatggttgtgaaggtagatgggaaagaaatttccactaaagagctgaaaaatggaggaaagattactacaattccatatggaat |
2923716 |
T |
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| Q |
201 |
ggctgtctggtcaactggtatt |
222 |
Q |
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| T |
2923715 |
ggctgtctggtcaactggtatt |
2923694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 36127139 - 36127319
Alignment:
| Q |
42 |
taggtttgataaaaggataacagcttttgccgaagacaagtttcaaagagatgggattgatgtgaaaacaggatccatggttgtgaaggtagatgggaaa |
141 |
Q |
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| T |
36127139 |
taggtttgacaaaagaataacaacctttgctgaagacaagttcaaaagagatggtattgatgtgaaaacaggatccatggttacaaaggtatctgacaga |
36127238 |
T |
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| Q |
142 |
gaaatttccactaaagagctgaaaaatggaggaaagattactacaattccatatggaatggctgtctggtcaactggtatt |
222 |
Q |
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| T |
36127239 |
gaaattaccactaaagaaatgaaaaatggaggagaaattactactattccatatggaatggctgtctggtcaactggtatt |
36127319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 16009956 - 16009871
Alignment:
| Q |
40 |
tataggtttgataaaaggataacagcttttgccgaagacaagtttcaaagagatgggattgatgtgaaaacaggatccatggttgt |
125 |
Q |
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| T |
16009956 |
tataggtttgacaagagaataacagaatttgctgaagaaaagttcaaaagagatggaattgatgtgaaattgggatcaatggttgt |
16009871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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