View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_low_21 (Length: 201)
Name: NF6382_low_21
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 39539439 - 39539606
Alignment:
| Q |
18 |
gacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaactatttttgagtgaagagaatttgctgaattaacctcacaaggtttgaaggga |
117 |
Q |
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| T |
39539439 |
gacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaactatttttgagtgaagagaatttgctgaattaacctcataaggtttgaaggga |
39539538 |
T |
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| Q |
118 |
aaggagacaagccctaattgtgtccagcctaactacaatcatcatgcaaattaacataagatttcaag |
185 |
Q |
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| T |
39539539 |
aaggatacaagccctaattgtgtcaagcctaactacaatcatcatgcaaattaacataaaatttcaag |
39539606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 39519423 - 39519281
Alignment:
| Q |
18 |
gacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaactatttttgagtgaa-gagaatttgctgaattaacctcacaaggtttgaaggg |
116 |
Q |
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| T |
39519423 |
gacaagattgttgcagcaatgagagctttcaaaggg-ttgtacaaaactattttttagtgaaagagaattcgctgaattaacctcacaaggtttcaaggg |
39519325 |
T |
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| Q |
117 |
aaaggagacaagccctaa-ttgtgtccagcctaactacaatcat |
159 |
Q |
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| T |
39519324 |
aaaggatacaagccctaacttgtgtcaaacctaactacaatcat |
39519281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 2552893 - 2552801
Alignment:
| Q |
18 |
gacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaa--ctatttttgagt-gaagagaatttgctgaattaacctcacaaggt |
108 |
Q |
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| T |
2552893 |
gacaagatggttgcagcaatgagagctttcaaa-gggttgtataaaactctatttttaagtagaagaggatttgctgaattaacctcacaaggt |
2552801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 2628350 - 2628442
Alignment:
| Q |
18 |
gacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaa--ctatttttgagt-gaagagaatttgctgaattaacctcacaaggt |
108 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| ||||| || |||||| |||||||||||| |||||||||||| |
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| T |
2628350 |
gacaagatggttgcagctatgagagctttcaaa-gggttgtaccaaactctaattttgtgtagaagaggatttgctgaatttacctcacaaggt |
2628442 |
T |
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