View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6382_low_4 (Length: 357)
Name: NF6382_low_4
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6382_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 25575378 - 25575727
Alignment:
| Q |
8 |
gagcacagattggtgaggaaaccttgaatcgcccaaacagttcaaaattaaagcatactggttatagacgtggagaagcaggtcataagatgcaaaattg |
107 |
Q |
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| T |
25575378 |
gagcacagattggtgaggaaaccttgaaccgcccaaacagttcaaaattaaagcatactggttatagacgtggagaagcaggtcataagatgcaaaattg |
25575477 |
T |
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| Q |
108 |
taggaaagaacactcgttgcggagaaaatataacagattggatgatgagcatgctgataaaatagacaaaaagcgcagagttgaagatgacattgagtct |
207 |
Q |
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| T |
25575478 |
taggaaagaacactcgttgcggagaaaatataacagattggatgatgagcatgctgataaaatagacaaaaagcgcagagttgaagatgacattgagtct |
25575577 |
T |
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| Q |
208 |
ggatggggttcttgggtgattccgcagtcaaatggagatgctttattgatgagccaccaaagagataagtggagggtgtctggttcacggaatgattgtg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25575578 |
ggatggggttcttgggtgattccgcagtcaaatggagatgctttattgatgagccaccaaagagataagtggagggtgtctggttcacggagtgattgtg |
25575677 |
T |
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| Q |
308 |
caccatttagaaatgaatcatccctggtagcaaaggacactgaggagtat |
357 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25575678 |
caccattgagaaatgaatcatccccggtagcaaaggacactgaggagtat |
25575727 |
T |
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