View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6382_low_6 (Length: 335)

Name: NF6382_low_6
Description: NF6382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6382_low_6
NF6382_low_6
[»] chr2 (4 HSPs)
chr2 (8-319)||(37535942-37536260)
chr2 (128-211)||(35453239-35453322)
chr2 (184-259)||(19572563-19572638)
chr2 (184-262)||(43050106-43050184)
[»] chr3 (2 HSPs)
chr3 (142-215)||(22318226-22318299)
chr3 (142-259)||(43726564-43726681)
[»] chr4 (4 HSPs)
chr4 (142-242)||(45195754-45195854)
chr4 (142-216)||(33086896-33086970)
chr4 (110-196)||(3322229-3322315)
chr4 (177-259)||(26988979-26989061)
[»] chr8 (2 HSPs)
chr8 (104-215)||(37325123-37325234)
chr8 (177-216)||(41868175-41868214)
[»] chr6 (2 HSPs)
chr6 (184-253)||(10242568-10242637)
chr6 (195-259)||(32982100-32982164)
[»] chr7 (1 HSPs)
chr7 (142-216)||(4451859-4451933)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 37535942 - 37536260
Alignment:
Q  8 taacataggctaattaaatttttattaagattagggataataattagactcatatccaatgaatattatctagtaaaataaataaaacnnnnnnnn---- 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  37535942 taacatgggctaattaaatttttattaagattagggataataattagactcatatccaatgaatattatctagtaaaataaataaaacttcttttctttt 37536041  T
Q  104 ---ccatcctattgatttctcgcgcgctatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacat 200  Q
       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37536042 tttccatcctattgatttctcgcgcgctatatacaatacatattatataatctgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacat 37536141  T
Q  201 ttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatgtcaaaaaataaccataacggatgtagtaaaaccctacatta 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  37536142 ttcgaattttaaaatcaaaataaagcgcgcgagaacctcataaggtgacaaaagtaatgccaaaaaataaccataacggatggagtaaaaccctacatta 37536241  T
Q  301 tacatatgaacatggatag 319  Q
    |||||||||||||||||||    
T  37536242 tacatatgaacatggatag 37536260  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 35453322 - 35453239
Alignment:
Q  128 tatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaatttta 211  Q
    |||||||||| || ||||||||||||||||| |||||| |||   ||| ||||| ||||| || ||||||||||||||||||||    
T  35453322 tatatacaattcagattatataatttgaatgtcataaatatcctataaaaacctgtaaaatatattaaaacatttcgaatttta 35453239  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 19572638 - 19572563
Alignment:
Q  184 aaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatg 259  Q
    |||||| |||||||||||||  ||||||||||| |||||  || ||| |||| |||| ||||||| ||||||||||    
T  19572638 aaaacacgttaaaacatttcagattttaaaatccaaatatggcacgccagaaactcacaaggtgaaaaaagtaatg 19572563  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 43050184 - 43050106
Alignment:
Q  184 aaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatgtca 262  Q
    |||||| ||| |||||||||  |||||||||||  ||||| ||| || |||| |||||| |||| ||||||||||||||    
T  43050184 aaaacacgttgaaacatttcagattttaaaatccgaataaggcgtgcaagaaactcatagggtgggaaaagtaatgtca 43050106  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 22318299 - 22318226
Alignment:
Q  142 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaat 215  Q
    |||||| |||| ||||  |||||||||||| ||| |||||| ||||||||||||||||||||  ||||||||||    
T  22318299 attatagaattcgaatagcataaacatctcataaaaaccttcaaaacatgttaaaacatttcatattttaaaat 22318226  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 259
Target Start/End: Complemental strand, 43726681 - 43726564
Alignment:
Q  142 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcat 241  Q
    ||||||||||| |||  | ||||||| ||| | | ||||| ||||||||| ||||| |||||  ||||||||||   ||||  ||||||||||| |||||    
T  43726681 attatataattcgaactatataaacacctcatcaaaacctctaaaacatgataaaatatttctgattttaaaattctaatagggcgcgcgagaaactcat 43726582  T
Q  242 aaggtgagaaaagtaatg 259  Q
    ||||||  ||||||||||    
T  43726581 aaggtggaaaaagtaatg 43726564  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 45195754 - 45195854
Alignment:
Q  142 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcat 241  Q
    ||||||||||| ||| |||||||||||||  ||| || ||  |||| | ||||||||||||||||||||| |||  |||||| ||| ||||||| |||||    
T  45195754 attatataattcgaacgacataaacatcttataaaaatctccaaaatacgttaaaacatttcgaattttagaattcaaataaggcgtgcgagaaactcat 45195853  T
Q  242 a 242  Q
    |    
T  45195854 a 45195854  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 33086970 - 33086896
Alignment:
Q  142 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatc 216  Q
    ||||||||||| |||||||| ||||| | | ||| |  || ||||||| ||||||||||||||||||||||||||    
T  33086970 attatataattcgaatgacaaaaacaccccataaaaggctctaaaacacgttaaaacatttcgaattttaaaatc 33086896  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 3322229 - 3322315
Alignment:
Q  110 tattgatttctcgcgcgctatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaa 196  Q
    |||||||||||||| ||| ||||||| | |  || |||||||||||| || ||||||||||| ||| |||||  |||||| ||||||    
T  3322229 tattgatttctcgcacgccatatacagttctgatgatataatttgaacgatataaacatctcataaaaacctccaaaacacgttaaa 3322315  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 26988979 - 26989061
Alignment:
Q  177 aacctttaaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatg 259  Q
    |||||| |||||| |||||||||||||| |||||| |||| | |||  || ||| |||| |||||| |||| |||||||||||    
T  26988979 aaccttcaaaacacgttaaaacatttcggattttagaatctagatagggcacgcaagaaactcatagggtgggaaaagtaatg 26989061  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 37325234 - 37325123
Alignment:
Q  104 ccatcctattgatttctcgcgcgctatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttc 203  Q
    ||||| |||||||||||| ||||   ||| ||||  | |||||| ||||  ||||||||||||||| | | | |||||  |||||| |||||||||||||    
T  37325234 ccatcttattgatttctcacgcgtcctatgcaatttagattatagaattcaaatgacataaacatcccattaaaacctccaaaacacgttaaaacatttc 37325135  T
Q  204 gaattttaaaat 215  Q
    ||||||||||||    
T  37325134 gaattttaaaat 37325123  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 41868175 - 41868214
Alignment:
Q  177 aacctttaaaacatgttaaaacatttcgaattttaaaatc 216  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  41868175 aacctttaaaacatattaaaatatttcgaattttaaaatc 41868214  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 10242568 - 10242637
Alignment:
Q  184 aaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaa 253  Q
    |||||| |||||||||||||  |||||  |||| |||||| |||||||| || |||||||||||||||||    
T  10242568 aaaacacgttaaaacatttcagattttggaatccaaataaggcgcgcgaaaaactcataaggtgagaaaa 10242637  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 32982100 - 32982164
Alignment:
Q  195 aaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatg 259  Q
    |||||||||| |||||||||||| |||| |||| || ||||  ||||||||||| ||||||||||    
T  32982100 aaacatttcgtattttaaaatcataatagagcgtgcaagaaattcataaggtgaaaaaagtaatg 32982164  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 4451933 - 4451859
Alignment:
Q  142 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatc 216  Q
    |||||||||| |||| |||||||| | | | ||| ||| |  |||||||||||||||||||| ||||||||||||    
T  4451933 attatataatctgaacgacataaataacccataaaaacttcaaaaacatgttaaaacatttcaaattttaaaatc 4451859  T

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