View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6383_high_5 (Length: 332)

Name: NF6383_high_5
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6383_high_5
NF6383_high_5
[»] chr3 (12 HSPs)
chr3 (219-332)||(37921751-37921871)
chr3 (221-332)||(27221601-27221719)
chr3 (217-277)||(9291987-9292047)
chr3 (219-301)||(36430155-36430243)
chr3 (217-294)||(2545206-2545290)
chr3 (217-294)||(35127000-35127084)
chr3 (246-332)||(46278832-46278924)
chr3 (161-216)||(2544979-2545034)
chr3 (161-216)||(35127214-35127269)
chr3 (161-216)||(36430005-36430060)
chr3 (161-216)||(46278520-46278575)
chr3 (226-301)||(9308795-9308877)
[»] chr1 (8 HSPs)
chr1 (246-332)||(23552345-23552431)
chr1 (12-90)||(23552544-23552622)
chr1 (269-331)||(35754296-35754358)
chr1 (161-216)||(32060554-32060609)
chr1 (165-216)||(35754030-35754081)
chr1 (183-216)||(23552505-23552538)
chr1 (217-249)||(35754268-35754300)
chr1 (219-253)||(8082025-8082059)
[»] chr6 (6 HSPs)
chr6 (217-332)||(9642-9765)
chr6 (217-332)||(12368-12491)
chr6 (217-301)||(3185831-3185922)
chr6 (161-216)||(12667-12722)
chr6 (161-216)||(17702-17757)
chr6 (161-216)||(9941-9996)
[»] chr5 (6 HSPs)
chr5 (226-332)||(2643438-2643552)
chr5 (217-301)||(11016226-11016317)
chr5 (161-216)||(2643668-2643723)
chr5 (161-216)||(2315919-2315974)
chr5 (161-216)||(11016002-11016057)
chr5 (260-301)||(14435223-14435264)
[»] chr8 (12 HSPs)
chr8 (217-279)||(30735753-30735815)
chr8 (219-301)||(990110-990199)
chr8 (217-301)||(13958543-13958634)
chr8 (161-216)||(7840034-7840089)
chr8 (161-216)||(29668752-29668807)
chr8 (161-216)||(11676271-11676326)
chr8 (161-216)||(30735970-30736025)
chr8 (217-276)||(11668241-11668307)
chr8 (217-276)||(11676543-11676609)
chr8 (217-253)||(29668932-29668968)
chr8 (293-332)||(29668967-29669006)
chr8 (217-253)||(7839854-7839890)
[»] chr4 (9 HSPs)
chr4 (217-329)||(28071182-28071302)
chr4 (246-309)||(25536921-25536984)
chr4 (161-216)||(28071453-28071508)
chr4 (217-284)||(2035238-2035312)
chr4 (246-301)||(25516641-25516696)
chr4 (161-216)||(50063749-50063804)
chr4 (293-332)||(50063973-50064012)
chr4 (161-195)||(25516846-25516880)
chr4 (161-195)||(25536738-25536772)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 37921871 - 37921751
Alignment:
Q  219 aaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgattacagtttgtt 311  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  37921871 aaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctcttcgttcaggtttgcgatttcagtttgtt 37921772  T
Q  312 cctgctgcttgccgtttgcga 332  Q
    |||||||||||||||||||||    
T  37921771 cctgctgcttgccgtttgcga 37921751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 27221601 - 27221719
Alignment:
Q  221 atcaattacttacttctcttcctgctt-------gcgattctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgattacagtttgttcc 313  Q
    ||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  27221601 atcaattacttacttctcttccttcttccgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatttcagtttgttcc 27221700  T
Q  314 tgctgcttgccgtttgcga 332  Q
    |||||||||||||||||||    
T  27221701 tgctgcttgccgtttgcga 27221719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 9291987 - 9292047
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgattctggtgttgccgtttcttgcttca 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291987 acaaatcaattacttacttctcttcctgcttgcgattctggtgttgccgtttcttgcttca 9292047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 36430155 - 36430243
Alignment:
Q  219 aaatcaattacttacttctcttcctgcttgc-------gattctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36430155 aaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctc-ttgttcaggtttgcgatt 36430243  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 2545206 - 2545290
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttg-------cgattctggtgttgccgtttcttgcttcactctctttgttcaggtt 294  Q
    ||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2545206 acaaatcaattacttacttctcttcctgcttgagatttgcgattcttgtgttgccgtttcttgcttcactctctttgttcaggtt 2545290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 35127084 - 35127000
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtt 294  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||    
T  35127084 acaaatcaattacttacttctcttcctgcttgcgatttgccattctggtgttgccgtttcttgcttcactctctttcttcaggtt 35127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 46278832 - 46278924
Alignment:
Q  246 ttgcgattctggtgttgccgtttcttgcttc------actctctttgttcaggtttgcgattacagtttgttcctgctgcttgccgtttgcga 332  Q
    |||||||| ||||||||||||||||||||||      | ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  46278832 ttgcgattttggtgttgccgtttcttgcttcttgttcattctctttgttcaggtttgcgatttcagtttggtcctgctgcttgccgtttgcga 46278924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 2544979 - 2545034
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2544979 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 2545034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 35127269 - 35127214
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35127269 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 35127214  T

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Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 36430005 - 36430060
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36430005 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 36430060  T

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Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 46278520 - 46278575
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  46278520 accggtaccgggattgcggccgttacaaaacggtatcagcagccaacgtgaccgtt 46278575  T

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Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 9308877 - 9308795
Alignment:
Q  226 ttacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    ||||||||||||||||||||||||||||       || ||||||||||||||||||||| ||||||| |||||||||||||||    
T  9308877 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttgccgtttcttgcttcattctctttcttcaggtttgcgatt 9308795  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 246 - 332
Target Start/End: Complemental strand, 23552431 - 23552345
Alignment:
Q  246 ttgcgattctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgattacagtttgttcctgctgcttgccgtttgcga 332  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23552431 ttgcgattctggtgttgccctttcttgcttcactctctttgttcaggtttgcgattacagtttgttcctgctgcttgccgtttgcga 23552345  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 23552622 - 23552544
Alignment:
Q  12 atcattaacaatcggttccagatcaatgtccattggaatcggacctgattcttggttccgcatagtagcttgagaaaag 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  23552622 atcattaacaatcggttccagatcaatgtccattggaatcggacctgattcttggttcctcgtcgtagcttgagaaaag 23552544  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 35754296 - 35754358
Alignment:
Q  269 cttgcttcactctctttgttcaggtttgcgattacagtttgttcctgctgcttgccgtttgcg 331  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35754296 cttgcttcattctctttgttcaggtttgcgatttcagtttgttcctgctgcttgccgtttgcg 35754358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 32060609 - 32060554
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32060609 accggtgccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 32060554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 35754030 - 35754081
Alignment:
Q  165 gtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35754030 gtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 35754081  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 23552538 - 23552505
Alignment:
Q  183 ttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||||||||||||||||||    
T  23552538 ttacaaaacggtatcagcagccaccgtgaccgtt 23552505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 35754268 - 35754300
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgc 249  Q
    |||||||||||||||||||||||||||||||||    
T  35754268 acaaatcaattacttacttctcttcctgcttgc 35754300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 8082025 - 8082059
Alignment:
Q  219 aaatcaattacttacttctcttcctgcttgcgatt 253  Q
    ||||||||| |||||||||||||||||||||||||    
T  8082025 aaatcaatttcttacttctcttcctgcttgcgatt 8082059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 217 - 332
Target Start/End: Complemental strand, 9765 - 9642
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcga-ttacagttt 308  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  9765 acaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattttcagttt 9666  T
Q  309 gttcctgctgcttgccgtttgcga 332  Q
    || |||||||| ||||||||||||    
T  9665 gtccctgctgcctgccgtttgcga 9642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 217 - 332
Target Start/End: Complemental strand, 12491 - 12368
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcga-ttacagttt 308  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  12491 acaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattttcagttt 12392  T
Q  309 gttcctgctgcttgccgtttgcga 332  Q
    || |||||||| ||||||||||||    
T  12391 gtccctgctgcctgccgtttgcga 12368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 3185922 - 3185831
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3185922 acaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatt 3185831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 12722 - 12667
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12722 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccttgaccgtt 12667  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 17757 - 17702
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  17757 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccttgaccgtt 17702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 9996 - 9941
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  9996 accggtaccgggattgcggccgttacaaaacggtatcagcagccacctttaccgtt 9941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 2643552 - 2643438
Alignment:
Q  226 ttacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgattacagtttgttcctgctg 318  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  2643552 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatttcagtttgttcctgctg 2643453  T
Q  319 c-ttgccgtttgcga 332  Q
    | |||||||||||||    
T  2643452 ctttgccgtttgcga 2643438  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 11016226 - 11016317
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgc-------gattctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  11016226 acaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgctgtttcttgcttcattctctttgttcaggtttgcgatt 11016317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 2643723 - 2643668
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2643723 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 2643668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 2315974 - 2315919
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  2315974 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgatcgtt 2315919  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 11016002 - 11016057
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  11016002 accggtaccggaattgcggacgttacaaaacggtatcagcggccaccgtgaccgtt 11016057  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 14435264 - 14435223
Alignment:
Q  260 ttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  14435264 ttgccgtttctttgttcattctctttgttcaggtttgcgatt 14435223  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 30735815 - 30735753
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgattctggtgttgccgtttcttgcttcact 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30735815 acaaatcaattacttacttctcttcctgcttgcgattctggtgttgccgtttcttgcttcact 30735753  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 990199 - 990110
Alignment:
Q  219 aaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||    
T  990199 aaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatt 990110  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 13958543 - 13958634
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgc-------gattctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  13958543 acaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcattctctttcttcaggtttgcgatt 13958634  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 7840089 - 7840034
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7840089 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 7840034  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 29668752 - 29668807
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  29668752 accggtaccgggattgtggccgttacaaaacggtatcagcagccaccgtgaccgtt 29668807  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 11676271 - 11676326
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  11676271 accggtaccgggattgcggccgttacaaatcggtatcggcagccaccgtgaccgtt 11676326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 30736025 - 30735970
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  30736025 accggtgccgggattgaggccgttacaaaacggtatcagcagccaccgtgaccgtt 30735970  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 11668241 - 11668307
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttg-------cgattctggtgttgccgtttcttgcttc 276  Q
    |||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  11668241 acaaatgaattacttacttctcttcctgcttgcgacttgcgattctggtgttgccgtttcttgcttc 11668307  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 11676543 - 11676609
Alignment:
Q  217 acaaatcaattacttacttctcttcctgc-------ttgcgattctggtgttgccgtttcttgcttc 276  Q
    |||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  11676543 acaaatgaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttc 11676609  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 29668932 - 29668968
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt 253  Q
    |||||||||||||||||||||||||||||||||||||    
T  29668932 acaaatcaattacttacttctcttcctgcttgcgatt 29668968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 29668967 - 29669006
Alignment:
Q  293 tttgcgattacagtttgttcctgctgcttgccgtttgcga 332  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29668967 tttgcgatttcagtttgttcctgctgcttgccgtttgcga 29669006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 7839890 - 7839854
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt 253  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  7839890 acaaaccaattacttacttctgttcctgcttgcgatt 7839854  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 28071302 - 28071182
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgattacagtttg 309  Q
    |||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||| |||||||||||||  |||| |||||||    
T  28071302 acaaatgaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcattctatttgttcaggtttaagatttcagtttg 28071203  T
Q  310 ttcctgc-tgcttgccgtttg 329  Q
    ||||||| |||||||||||||    
T  28071202 ttcctgcttgcttgccgtttg 28071182  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 25536921 - 25536984
Alignment:
Q  246 ttgcgattctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgattacagtttg 309  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  25536921 ttgcgattctggtgttgccgtttcttgcttcactctctttcttcagctttgcgatttcagtttg 25536984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 28071508 - 28071453
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28071508 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 28071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 2035312 - 2035238
Alignment:
Q  217 acaaatcaattacttacttctcttcctgcttgcgatt-------ctggtgttgccgtttcttgcttcactctctt 284  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  2035312 acaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctt 2035238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 25516696 - 25516641
Alignment:
Q  246 ttgcgattctggtgttgccgtttcttgcttcactctctttgttcaggtttgcgatt 301  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  25516696 ttgcgattctggtgttgccgtttcttgcttcactctctttcttcagctttgcgatt 25516641  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 50063749 - 50063804
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  50063749 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtcaccgtt 50063804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 50063973 - 50064012
Alignment:
Q  293 tttgcgattacagtttgttcctgctgcttgccgtttgcga 332  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  50063973 tttgcgatttcagtttgttcctgctgcttgccgtttgcga 50064012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 25516880 - 25516846
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggta 195  Q
    ||||||||||||||||||| |||||||||||||||    
T  25516880 accggtaccgggattgcggccgttacaaaacggta 25516846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 25536738 - 25536772
Alignment:
Q  161 accggtaccgggattgcggtcgttacaaaacggta 195  Q
    ||||||||||||||||||| |||||||||||||||    
T  25536738 accggtaccgggattgcggccgttacaaaacggta 25536772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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