View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6383_high_6 (Length: 282)

Name: NF6383_high_6
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6383_high_6
NF6383_high_6
[»] scaffold0001 (1 HSPs)
scaffold0001 (50-237)||(510059-510246)
[»] chr2 (7 HSPs)
chr2 (19-182)||(19038251-19038411)
chr2 (19-159)||(19038020-19038157)
chr2 (102-184)||(37349787-37349868)
chr2 (131-188)||(3470818-3470875)
chr2 (102-175)||(4108914-4108986)
chr2 (102-182)||(45109483-45109562)
chr2 (104-176)||(45107770-45107841)
[»] chr3 (9 HSPs)
chr3 (18-193)||(8820451-8820624)
chr3 (17-182)||(20000575-20000738)
chr3 (17-123)||(7850604-7850708)
chr3 (67-111)||(47437622-47437666)
chr3 (131-184)||(17472049-17472101)
chr3 (131-182)||(17441804-17441854)
chr3 (102-175)||(14486379-14486451)
chr3 (102-175)||(20127598-20127671)
chr3 (17-73)||(13411044-13411100)
[»] chr1 (5 HSPs)
chr1 (17-182)||(3400492-3400656)
chr1 (17-182)||(13117273-13117435)
chr1 (19-159)||(27121285-27121425)
chr1 (51-174)||(42606594-42606714)
chr1 (66-124)||(32877005-32877063)
[»] chr8 (2 HSPs)
chr8 (57-182)||(38809602-38809727)
chr8 (82-184)||(26568623-26568724)
[»] chr7 (2 HSPs)
chr7 (17-159)||(18573634-18573775)
chr7 (102-182)||(25248882-25248961)
[»] chr5 (4 HSPs)
chr5 (66-188)||(28076093-28076215)
chr5 (63-174)||(5538621-5538731)
chr5 (131-182)||(22860691-22860741)
chr5 (67-118)||(25698895-25698946)
[»] chr6 (5 HSPs)
chr6 (18-100)||(22748893-22748973)
chr6 (23-179)||(20129909-20130056)
chr6 (23-179)||(22202814-22202961)
chr6 (18-137)||(28549698-28549816)
chr6 (12-112)||(34220077-34220177)
[»] chr4 (7 HSPs)
chr4 (102-187)||(25243453-25243537)
chr4 (64-157)||(40286862-40286957)
chr4 (13-84)||(44078687-44078756)
chr4 (96-182)||(24557053-24557138)
chr4 (102-175)||(31954788-31954860)
chr4 (118-159)||(40137882-40137923)
chr4 (118-182)||(24826655-24826718)


Alignment Details
Target: scaffold0001 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 510059 - 510246
Alignment:
Q  50 ggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccaccttgaatatttcactaagcagctcacc 149  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  510059 ggggatcaaaatcattatcttgaacaatgtatttttcatctaagtcttattcaaagtgctcttggaattccaccttggatattttactaagcagctcacc 510158  T
Q  150 tgttgtaatttaacttatgtttacattcgtgaataatatgtgatgtactttaaccattcaaatgaataaatatcaatgtacttttatc 237  Q
    ||||||||||||| |||||||| ||| |||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  510159 tgttgtaatttaatttatgtttgcatacgtgaacaatatttgatgtactttaacaattcaaatgaataaatatcaatttacttttatc 510246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 19038411 - 19038251
Alignment:
Q  19 ctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaatt 118  Q
    ||||||||| |||||||||||||| |||    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  19038411 ctataaaagtagacaactagagagtagta---gggatcaaattcattatcttgaacaatgtatttttcatatacgtcttattcagagtgctcttggaatt 19038315  T
Q  119 ccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    |||||| | | |||||| | ||||||||||||||||||| ||||||| ||||||||| ||||||    
T  19038314 ccacctaggacatttcattgagcagctcacctgttgtaaattaacttgtgtttacatacgtgaa 19038251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 19038157 - 19038020
Alignment:
Q  19 ctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaatt 118  Q
    ||||||||||||||||||| ||||||   |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19038157 ctataaaaggagacaactatagagca---atagggatcgaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttgaaatt 19038061  T
Q  119 ccaccttgaatatttcactaagcagctcacctgttgtaatt 159  Q
    |||| | | | |||||||| | || ||||||| || |||||    
T  19038060 ccacttaggacatttcactgatcaactcacctcttataatt 19038020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 37349787 - 37349868
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaata 184  Q
    ||||||||||||  | ||||||| | |  ||||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  37349787 agagtgctcttgagactccacctaggacgtttcactgagcagctcacctgttgtaa-ttaacttgtgtttacatacgtgaata 37349868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 3470818 - 3470875
Alignment:
Q  131 tttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaataatat 188  Q
    ||||| |||||||||||| | |||||||||||||| ||||||||| |||||| |||||    
T  3470818 tttcattaagcagctcacttattgtaatttaacttgtgtttacatacgtgaacaatat 3470875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 4108986 - 4108914
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacat 175  Q
    ||||||||||||  | ||||||||| |  ||||||| ||||||||||||||||||| ||||||| |||||||||    
T  4108986 agagtgctcttgagactccaccttggacgtttcactgagcagctcacctgttgtaa-ttaacttgtgtttacat 4108914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 45109562 - 45109483
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    ||||||||||||  | ||||||| | || ||||||| ||||||||||||||||||| ||| ||| ||||||||| ||||||    
T  45109562 agagtgctcttgagactccacctaggatgtttcactgagcagctcacctgttgtaa-ttatcttgtgtttacatacgtgaa 45109483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 45107841 - 45107770
Alignment:
Q  104 agtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacatt 176  Q
    ||||||||||  | ||||||| | || ||||||| ||||||||||||||||||| ||| ||| ||||||||||    
T  45107841 agtgctcttgagactccacctaggatgtttcactgagcagctcacctgttgtaa-ttatcttgtgtttacatt 45107770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 8820624 - 8820451
Alignment:
Q  18 cctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaat 117  Q
    |||||||||||||||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820624 cctataaaaggagacacctagagagcagt-agggacatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaat 8820526  T
Q  118 tccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaataatatgtgat 193  Q
    | ||| | | | |||  ||| ||||||||||||||||||| ||||||| ||||| ||| |||||| ||||| ||||    
T  8820525 ttcacataggacattctactgagcagctcacctgttgtaa-ttaacttgtgttttcatacgtgaacaatatttgat 8820451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 20000575 - 20000738
Alignment:
Q  17 gcctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaa 116  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| ||| ||||| |||| |||||||| |||||||||||||||||||||||||||| ||    
T  20000575 gcctataaaaggagacaactagagagc-gt-aaggggatcgaatccatgatcttaaacagtgtattttacatctaagtcttattcagagtgctcttgaaa 20000672  T
Q  117 ttccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    ||||||||   | |||||||  | ||||||| || |||||||||||||| ||||||||| ||||||    
T  20000673 ttccacctaagacatttcaccgaacagctcatctattgtaatttaacttgtgtttacatacgtgaa 20000738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 7850708 - 7850604
Alignment:
Q  17 gcctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaa 116  Q
    ||||||||||||||||||| | |||| ||| |||| |||| ||||| |||||||||||  |||||||| ||||||||||||||||||| |||||||||||    
T  7850708 gcctataaaaggagacaacgaaagagtagt-aaggagatcgaattctttatcttgaaccgtgtatttt-catctaagtcttattcagaatgctcttggaa 7850611  T
Q  117 ttccacc 123  Q
    |||||||    
T  7850610 ttccacc 7850604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 47437666 - 47437622
Alignment:
Q  67 tcttgaacaatgtatttttcatctaagtcttattcagagtgctct 111  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  47437666 tcttgaacaatgtatctttcatctaagtcttatttagagtgctct 47437622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 17472049 - 17472101
Alignment:
Q  131 tttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaata 184  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  17472049 tttcactgagcagctcacctgttgtaa-ttaacttgtgtttacatacgtgaata 17472101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 17441804 - 17441854
Alignment:
Q  131 tttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||| ||||||    
T  17441804 tttcactgagcagctcacctgttgtaa-ttaacttgtgtttacatacgtgaa 17441854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 14486451 - 14486379
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacat 175  Q
    ||||||||||||  | |||||||  || |||||||| | ||||||| ||||||||| |||||||||||||||||    
T  14486451 agagtgctcttgagactccacctaaaacatttcactgaacagctcatctgttgtaa-ttaacttatgtttacat 14486379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 20127671 - 20127598
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacat 175  Q
    ||||||||||||  | |||||||   || ||||||| ||||||||| ||||||||||| ||||| |||||||||    
T  20127671 agagtgctcttgagactccacctatgatgtttcactgagcagctcatctgttgtaattaaacttgtgtttacat 20127598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 13411100 - 13411044
Alignment:
Q  17 gcctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaa 73  Q
    ||||||||||||||||| ||||| |||||| |  |||||| | ||||||||||||||    
T  13411100 gcctataaaaggagacacctagaaagcagttagagggatcgagttcattatcttgaa 13411044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 3400492 - 3400656
Alignment:
Q  17 gcctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaa 116  Q
    |||||||||||||||||||||||||||||| ||||||||  |||  |||||||| |||  |||||||| |||||||| ||||||||||||||||||| ||    
T  3400492 gcctataaaaggagacaactagagagcagt-aaggggatggaatctattatcttaaacggtgtattttacatctaagccttattcagagtgctcttgaaa 3400590  T
Q  117 ttccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    |||||||| | | |||||||  |||||||||||| |||||||||||||| ||||||||| ||||||    
T  3400591 ttccacctaggacatttcaccgagcagctcacctattgtaatttaacttgtgtttacatacgtgaa 3400656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 13117273 - 13117435
Alignment:
Q  17 gcctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaa 116  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  13117273 gcctataaaaggagacatctagagagcaatgaaggggatcgaattcattatcttgaacaatgta-ttttcatct-agtcttattcagagtactcttggaa 13117370  T
Q  117 ttccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    | |||||  | |||||||||| |||||||||  || ||||| ||||||| ||||||||| ||||||    
T  13117371 tcccaccaaggatatttcactgagcagctcatatggtgtaa-ttaacttgtgtttacatacgtgaa 13117435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 27121285 - 27121425
Alignment:
Q  19 ctataaaaggagacaactagagagcagtgaaggggatcaaattcatt-atcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaat 117  Q
    ||||||||||||||| ||||||||||||  |||| || ||||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||| | |    
T  27121285 ctataaaaggagacacctagagagcagtagaggg-attaaattcatttatcatgaacaatgtatttttcatctaagtcttttacagagtgctcttgaatt 27121383  T
Q  118 tccaccttgaatatttcactaagcagctcacctgttgtaatt 159  Q
    ||||| |  |||||||| || ||||||||| |||||||||||    
T  27121384 tccacttgtaatatttctctgagcagctcagctgttgtaatt 27121425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 42606594 - 42606714
Alignment:
Q  51 gggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccaccttgaatatttcactaagcagctcacct 150  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||| |||||| ||||||||| ||||||||||| ||| |||||| | || |||| || |    
T  42606594 gggatcaaattcattatcttgaacgatgta-ttttcatttaagtcctattcacagtgctctt-gaattccacctagaacatttcattgagtagcttacat 42606691  T
Q  151 gttgtaatttaacttatgtttaca 174  Q
    ||||||| ||||||| ||||||||    
T  42606692 gttgtaa-ttaacttgtgtttaca 42606714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 32877005 - 32877063
Alignment:
Q  66 atcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccacct 124  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||| ||||| |||| |||||    
T  32877005 atcttaaacaaggtatttttcatttaagtcttatttagagtgatcttgaaatttcacct 32877063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 38809727 - 38809602
Alignment:
Q  57 aaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgta 156  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||  |||||||||||||||| |    
T  38809727 aaattcattatcttgaactgtgtatttttcatctaagtcttattcaaagtgctcttggaattccacctaggacatttcaccgagcagctcacctgttgaa 38809628  T
Q  157 atttaacttatgtttacattcgtgaa 182  Q
    ||||||||| ||||||||| ||||||    
T  38809627 atttaacttgtgtttacatacgtgaa 38809602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 26568623 - 26568724
Alignment:
Q  82 ttttcatctaagtcttattcagagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtga 181  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||||||| | ||||||| ||||||||| ||||||| ||||||||| | |||    
T  26568623 ttttcatctaagtcttatttagagtgctcttagaattcctcctagaacatttcactcaacagctcatctgttgtaa-ttaacttgtgtttacatacatga 26568721  T
Q  182 ata 184  Q
    |||    
T  26568722 ata 26568724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 18573634 - 18573775
Alignment:
Q  17 gcctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaa 116  Q
    ||||||||||||||||||||| |||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18573634 gcctataaaaggagacaactaaagagcagt-atgaggatcgaattcattatcttgaacaatgtatttttcatctaagtcttattcaaagtgctcttggaa 18573732  T
Q  117 ttccaccttgaatatttcactaagcagctcacctgttgtaatt 159  Q
    ||| ||||   | |||||| | |||| ||||||| ||||||||    
T  18573733 ttctacctaagacatttcattgagcaactcaccttttgtaatt 18573775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 25248961 - 25248882
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    ||||||||||||  | ||||||||| |  ||| ||| ||||||||||||||||||| ||||||| ||||||||| ||||||    
T  25248961 agagtgctcttgagactccaccttggacgttttactgagcagctcacctgttgtaa-ttaacttgtgtttacatacgtgaa 25248882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 28076093 - 28076215
Alignment:
Q  66 atcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaactt 165  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||| |||| || ||   |||||| ||  | || ||||||| ||||||||||||||    
T  28076093 atcttaaacaatgtattttacatctaaatcttattcagagtgctcttgaaatttcatctaagatattttaccgaacaactcacctcttgtaatttaactt 28076192  T
Q  166 atgtttacattcgtgaataatat 188  Q
    |||||||||| |||||| |||||    
T  28076193 atgtttacatacgtgaacaatat 28076215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 5538731 - 5538621
Alignment:
Q  63 attatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaa 162  Q
    ||||||||||||||||||| |||||||||||||||||||| | || |||||||| |||| ||   | |||||| | ||||||| |||| ||||||  |||    
T  5538731 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaa-ataa 5538633  T
Q  163 cttatgtttaca 174  Q
    ||| ||||||||    
T  5538632 cttgtgtttaca 5538621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 22860691 - 22860741
Alignment:
Q  131 tttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  22860691 tttcactaagcagctcacctgttgtaa-ttaacttatgtttacatacgtgaa 22860741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 25698946 - 25698895
Alignment:
Q  67 tcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaatt 118  Q
    |||||||||| |||| |||||||||| |||| |||||||||||||| |||||    
T  25698946 tcttgaacaacgtatgtttcatctaattctttttcagagtgctcttagaatt 25698895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 22748973 - 22748893
Alignment:
Q  18 cctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttatt 100  Q
    |||||||||||||||| |||||||||||| || || |||||||||||||||||||| | |||| |||||||||||||||||||    
T  22748973 cctataaaaggagacacctagagagcagtaaatgg-atcaaattcattatcttgaaaagtgta-ttttcatctaagtcttatt 22748893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 20130056 - 20129909
Alignment:
Q  23 aaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccac 122  Q
    ||||||||||| |||||||||||| |||   |||||||||||||||||||||| |||||| || ||||||||||| |||  ||| |||||| |||| |||    
T  20130056 aaaaggagacacctagagagcagt-aagcaaatcaaattcattatcttgaacagtgtattctt-atctaagtctttttc--agtactcttgaaatttcac 20129961  T
Q  123 cttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgt 179  Q
    ||  || |   ||||||| |||||||| ||||||| ||||||| |||||||||||||    
T  20129960 ct--aaga--ccactaagtagctcacccgttgtaa-ttaacttgtgtttacattcgt 20129909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 22202814 - 22202961
Alignment:
Q  23 aaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaattccac 122  Q
    ||||||||||| |||||||||||| |||   |||||||||||||||||||||| |||||| || ||||||||||| |||  ||| |||||| |||| |||    
T  22202814 aaaaggagacacctagagagcagt-aagcaaatcaaattcattatcttgaacagtgtattctt-atctaagtctttttc--agtactcttgaaatttcac 22202909  T
Q  123 cttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgt 179  Q
    ||  || |   ||||||| |||||||| ||||||| ||||||| |||||||||||||    
T  22202910 ct--aaga--ccactaagtagctcacccgttgtaa-ttaacttgtgtttacattcgt 22202961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 28549816 - 28549698
Alignment:
Q  18 cctataaaaggagacaactagagagcagtgaaggggatcaaattca-ttatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaa 116  Q
    |||||||||||||||| ||||||||||| | ||||||   |||||| ||||||| ||||||||| ||||||||||| ||||||| | ||||| |||  |     
T  28549816 cctataaaaggagacacctagagagcagcg-aggggagggaattcatttatcttaaacaatgta-ttttcatctaaatcttatttatagtgcacttaaag 28549719  T
Q  117 ttccaccttgaatatttcact 137  Q
    |||||||| | ||||||||||    
T  28549718 ttccacctaggatatttcact 28549698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 34220177 - 34220077
Alignment:
Q  12 atgaagcctataaaaggagacaactagagagcagtgaag-gggatcaaattcattatcttga--acaatgtatttttcatctaagtcttattcagagtgc 108  Q
    |||| |||||||||| ||| || ||||||| |||  ||| ||||||||||||||||||||||  ||||||| ||||||| |||||||||||| | |||||    
T  34220177 atgaggcctataaaaagaggcatctagagaacag--aagagggatcaaattcattatcttgaacacaatgt-tttttcagctaagtcttatttaaagtgc 34220081  T
Q  109 tctt 112  Q
    ||||    
T  34220080 tctt 34220077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 25243453 - 25243537
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaataata 187  Q
    ||||||||||||  | ||||||| | || ||||||| ||||||||||||||||||| |||| || ||||||||| |||||| ||||    
T  25243453 agagtgctcttgagactccacctaggatgtttcactgagcagctcacctgttgtaa-ttaatttgtgtttacatacgtgaacaata 25243537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 40286957 - 40286862
Alignment:
Q  64 ttatcttgaacaatgtatttttcatctaagtcttatt--cagagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaa 157  Q
    ||||||| |||| |||||||||||||||||| || ||  ||||||||||||| |||||||| | | | |||||||  | || ||||||||||||||    
T  40286957 ttatcttaaacagtgtatttttcatctaagttttttttgcagagtgctcttgaaattccacttcggacatttcaccgaacatctcacctgttgtaa 40286862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 44078756 - 44078687
Alignment:
Q  13 tgaagcctataaaaggagacaactagagagcagtgaaggggatcaaattcattatcttgaacaatgtatttt 84  Q
    ||||||||||||||||||||| |||||||||||  | ||||||  ||||||| | |||||||| ||||||||    
T  44078756 tgaagcctataaaaggagacacctagagagcaggaagggggat--aattcatcagcttgaacattgtatttt 44078687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 24557053 - 24557138
Alignment:
Q  96 ttattcagagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    ||||| |||||||||||  ||||||||||  || ||| |||||| || || |||| |||||| ||||||||||||||||| ||||||    
T  24557053 ttatttagagtgctcttaaaattccacctaaaacattccactaaacaacttaccttttgtaa-ttaacttatgtttacatacgtgaa 24557138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 31954788 - 31954860
Alignment:
Q  102 agagtgctcttggaattccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacat 175  Q
    ||||||||||||  | ||||||| | |  ||||||| ||||||||||||||||||| ||||||| |||||||||    
T  31954788 agagtgctcttgagactccacctaggacgtttcactgagcagctcacctgttgtaa-ttaacttgtgtttacat 31954860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 40137882 - 40137923
Alignment:
Q  118 tccaccttgaatatttcactaagcagctcacctgttgtaatt 159  Q
    ||||||| | || |||||||||||||||||||||||||||||    
T  40137882 tccacctaggatgtttcactaagcagctcacctgttgtaatt 40137923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 24826655 - 24826718
Alignment:
Q  118 tccaccttgaatatttcactaagcagctcacctgttgtaatttaacttatgtttacattcgtgaa 182  Q
    ||||||| | || ||||| | ||||||||||||||||||| ||||||| ||||||||| ||||||    
T  24826655 tccacctaggatgtttcattgagcagctcacctgttgtaa-ttaacttgtgtttacatacgtgaa 24826718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University