View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6383_high_7 (Length: 280)

Name: NF6383_high_7
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6383_high_7
NF6383_high_7
[»] chr8 (1 HSPs)
chr8 (1-280)||(45472892-45473180)
[»] chr1 (4 HSPs)
chr1 (1-280)||(23182507-23182795)
chr1 (1-280)||(4976883-4977156)
chr1 (25-186)||(21741028-21741198)
chr1 (25-98)||(5316523-5316596)
[»] chr4 (6 HSPs)
chr4 (25-280)||(10430628-10430892)
chr4 (27-225)||(54780194-54780401)
chr4 (25-98)||(34768771-34768844)
chr4 (25-92)||(2975504-2975568)
chr4 (120-187)||(2244538-2244605)
chr4 (243-277)||(54780404-54780438)
[»] chr2 (5 HSPs)
chr2 (115-280)||(40446076-40446240)
chr2 (25-92)||(40506606-40506673)
chr2 (25-92)||(40445976-40446043)
chr2 (29-92)||(34693917-34693980)
chr2 (29-92)||(34716329-34716392)
[»] chr6 (3 HSPs)
chr6 (25-225)||(19740304-19740513)
chr6 (118-182)||(27994715-27994779)
chr6 (229-280)||(19740264-19740315)
[»] chr5 (3 HSPs)
chr5 (115-210)||(23284706-23284801)
chr5 (214-280)||(23284666-23284732)
chr5 (25-98)||(23284826-23284899)
[»] chr3 (1 HSPs)
chr3 (117-194)||(54577620-54577697)
[»] scaffold0012 (1 HSPs)
scaffold0012 (119-192)||(206768-206841)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 45472892 - 45473180
Alignment:
Q  1 gaatttcaggttctttannnnnnnaatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct-- 98  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||||      
T  45472892 gaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggctcctcctagattgctgcctaagattagaaagtttgagtctggcgctga 45472991  T
Q  99 -------aggnnnnnnnnnnnnnttgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgat 191  Q
           |||             |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  45472992 gaagcgtaggaaaaagaaaaaaattgctgagttaattgaatcccaaacaggagctctggataaatttattgtaaaagaaacacaaattcatattgatgat 45473091  T
Q  192 agtcttgttgatactattcatgttgatgctattcttgttgatgctattcctgttgataatgttgatgttatgcctattcctattgatga 280  Q
    |||| |||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  45473092 agtcctgttgatactattcctattgatgctattcatgttgatgctattcccgttgataatgttgatgctatgcctattcctattgatga 45473180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 23182507 - 23182795
Alignment:
Q  1 gaatttcaggttctttannnnnnnaatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct-- 98  Q
    |||||||||||||||||       ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||      
T  23182507 gaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggttccttctagattgccgcctaagattagaaagtttgagtctggcgctga 23182606  T
Q  99 -------aggnnnnnnnnnnnnnttgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgat 191  Q
           |||             ||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||    
T  23182607 gaagcgtaggaaaaagaaaaaaattgctgagttagttgaatcccaaaaaggagccctggataaatttattgtaaaagaaacacaaattcatattgatgat 23182706  T
Q  192 agtcttgttgatactattcatgttgatgctattcttgttgatgctattcctgttgataatgttgatgttatgcctattcctattgatga 280  Q
    |||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23182707 agtcctgttgatactattcctattgatgctattcatgttgatgctattcctgttgataatgttgatgctatgcctattcctattgatga 23182795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4977156 - 4976883
Alignment:
Q  1 gaatttcaggttctttannnnnnnaatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct-- 98  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||      
T  4977156 gaatttcaggttctttatttatttaatcttcctctatgcctcctaaattggctcctcctagattgccgcctaagattagaaagtttgagtctggcgctga 4977057  T
Q  99 -------aggnnnnnnnnnnnnnttgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgat 191  Q
           |||             ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  4977056 gaagcgtaggaaaaagaaaaaaattgatgagttaattgaatcccaaacaggagctctggataaatttattgtaaaagaaacacaaattcatattgatgat 4976957  T
Q  192 agtcttgttgatactattcatgttgatgctattcttgttgatgctattcctgttgataatgttgatgttatgcctattcctattgatga 280  Q
    |||| |||||||||||||| || |||||||               ||||| ||||||||||||||||||||||||||||||||||||||    
T  4976956 agtcctgttgatactattcctgatgatgct---------------attcccgttgataatgttgatgttatgcctattcctattgatga 4976883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 21741198 - 21741028
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgc---------taggnnnnnnnnnnnnnt 115  Q
    |||||||| ||||||||||||||||  ||||| |||||||| ||||||||||| |||||||||||||| ||||         ||||             |    
T  21741198 aatcttccactatgcctcctaaattttctcctcctagattgccgcctaagattcgaaagtttgagtctggcgctgagaagcgtaggaaaaagaaaaaaat 21741099  T
Q  116 tgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattg 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  21741098 tgctgagttaattgaatcccaaacaggagctcttgataaatttattttaaaagaaatacaaattcctattg 21741028  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 5316523 - 5316596
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct 98  Q
    |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||| |||||||||||||| |||||    
T  5316523 aatcttcctctatgcctcctaaattgactcctcctatattgccgcctaagatttgaaagtttgagtctggcgct 5316596  T

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Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 280
Target Start/End: Complemental strand, 10430892 - 10430628
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct---------aggnnnnnnnnnnnnnt 115  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || ||         |||             |    
T  10430892 aatcttcatctatgcctcctaaattggctcctcctagattgccgcctaagattcgaaagtttgagtctggcactgagaagcgtaggaaaaagaaaaaaat 10430793  T
Q  116 tgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgatagtcttgttgatactattcatgtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||    
T  10430792 tgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgatagtcctgttgatactatttctgtt 10430693  T
Q  216 gatgctattcttgttgatgctattcctgttgataatgttgatgttatgcctattcctattgatga 280  Q
    |||| ||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  10430692 gatgttattcctgttgatgctattctcgttgataatgttgatgctatgcctattcctattgatga 10430628  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 54780194 - 54780401
Alignment:
Q  27 tcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct---------aggnnnnnnnnnnnnnttg 117  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||         |||             |||    
T  54780194 tcttcctctatgcctcctaaattggctcctcctagattgccgcctaagattagaaagtttgagtctcgcgctgagaagcgtaggaaaaagaaaaaaattg 54780293  T
Q  118 ctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgatagtcttgttgatactattcatgttga 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  54780294 cttagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattccttttgatgatagtcctgttgatactattcctgttga 54780393  T
Q  218 tgctattc 225  Q
    ||||||||    
T  54780394 tgctattc 54780401  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 34768844 - 34768771
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct 98  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||    
T  34768844 aatcttcctgtatgcctcctaaattggctcctcctagattgccgcctaagattcgaaagtttgagtctggcgct 34768771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 2975568 - 2975504
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtct 92  Q
    ||||||||||||||||||||||||| ||||   ||| |||| ||||||||||||||||||||||||||    
T  2975568 aatcttcctctatgcctcctaaattagctc---ctatattgccgcctaagattagaaagtttgagtct 2975504  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 2244538 - 2244605
Alignment:
Q  120 gagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattga 187  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  2244538 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 2244605  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 54780404 - 54780438
Alignment:
Q  243 gttgataatgttgatgttatgcctattcctattga 277  Q
    ||||| |||||||||||||||||||||||||||||    
T  54780404 gttgaaaatgttgatgttatgcctattcctattga 54780438  T

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Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 40446076 - 40446240
Alignment:
Q  115 ttgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgatagtcttgttgatactattcatgt 214  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||  ||||| |||    
T  40446076 ttgctgagttaattgaatcc-aaacaggagctcttgataattttattgtaaaagaaacacaaattcctattgatgatagtcctattgatgttattcctgt 40446174  T
Q  215 tgatgctattcttgttgatgctattcctgttgataatgttgatgttatgcctattcctattgatga 280  Q
    ||||||||||| |||||||||| |||  ||||||| |||||||| |||||||||||||||||||||    
T  40446175 tgatgctattcctgttgatgctgttctcgttgatattgttgatgctatgcctattcctattgatga 40446240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 40506606 - 40506673
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtct 92  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40506606 aatcttcctctatgcctcctaaattggctcctcctagattgccgcctaagattagaaagtttgagtct 40506673  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 40445976 - 40446043
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtct 92  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40445976 aatcttcctctatgcctcttaaattggctcctcctagattgccgcctaagattagaaagtttgagtct 40446043  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 34693917 - 34693980
Alignment:
Q  29 ttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtct 92  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||||||    
T  34693917 ttcctctatgcctcctaaattggctcctcctagattgccacctaagattcgaaagtttgagtct 34693980  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 34716329 - 34716392
Alignment:
Q  29 ttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtct 92  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||||||    
T  34716329 ttcctctatgcctcctaaattggctcctcctagattgccacctaagattcgaaagtttgagtct 34716392  T

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Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 19740513 - 19740304
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgcta---------ggnnnnnnnnnnnnnt 115  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||         ||             |    
T  19740513 aatcttcctctatgcctcctaaattggatcctcctagattgtcgcctaagattcgaaagtttgagtctggcgctaagaagcgtaggaaaaagaaaaaaat 19740414  T
Q  116 tgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgatagtcttgttgatactattcatgtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  | ||    
T  19740413 tgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaatttctattgatgatagtcctgttgatactatttctatt 19740314  T
Q  216 gatgctattc 225  Q
    ||||||||||    
T  19740313 gatgctattc 19740304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 27994715 - 27994779
Alignment:
Q  118 ctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcct 182  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  27994715 ctgagttaattgaatcccaaacagaagctattgataaatttattgtaaaagaaacacatattcct 27994779  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 19740315 - 19740264
Alignment:
Q  229 ttgatgctattcctgttgataatgttgatgttatgcctattcctattgatga 280  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  19740315 ttgatgctattcccgttgataatgttgatgctatgcctattcctattgatga 19740264  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 23284801 - 23284706
Alignment:
Q  115 ttgctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgatagtcttgttgatactattc 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||    
T  23284801 ttgctgagttaattgaatcccaaacaggagctcttgaaaaatttattgtaaaagaaacacaaattcctattgatgttattcctgttgatgctattc 23284706  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 23284732 - 23284666
Alignment:
Q  214 ttgatgctattcttgttgatgctattcctgttgataatgttgatgttatgcctattcctattgatga 280  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  23284732 ttgatgttattcctgttgatgctattcccgttgataatgttgatgctatgcctattcctattgatga 23284666  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 23284899 - 23284826
Alignment:
Q  25 aatcttcctctatgcctcctaaattggctcctgctagattgtcgcctaagattagaaagtttgagtctagcgct 98  Q
    ||||||| |||||||||  ||||||||||||| |||||||| |||| ||||||| ||||||||||||| |||||    
T  23284899 aatcttcttctatgccttttaaattggctcctcctagattgccgcccaagattaaaaagtttgagtctggcgct 23284826  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 54577697 - 54577620
Alignment:
Q  117 gctgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgatagt 194  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54577697 gctgagttaattgaatcccaaacatgagctcttgataaatttattgtaaaagaaacacaaattcttattgatgatagt 54577620  T

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Target: scaffold0012 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 206841 - 206768
Alignment:
Q  119 tgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattgatgata 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  206841 tgagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacgcaagttcctattgatgata 206768  T

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