View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6383_low_10 (Length: 273)
Name: NF6383_low_10
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6383_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 44203217 - 44203046
Alignment:
| Q |
112 |
aaaacgaaacattcattttacatcagcagtataagagtatcaatttag--------------gtttaagtgtataaaagaaaggattatgcatcaactat |
197 |
Q |
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| T |
44203217 |
aaaacgaaacattcattttacatcagcagtataagagtatcaatttagctttatatctcctagtttaagtgtataaaagaaaggattatgcatcaactat |
44203118 |
T |
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| Q |
198 |
tttttcgcatcattttgaaaaggttcaaatatttgacatagtaattagagtttactaataaatgaattgtct |
269 |
Q |
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| T |
44203117 |
tttttcgcatcattttgaaaaggttcaaatatttgacatagtaattagagtttactaataaattaattgtct |
44203046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 44204140 - 44204025
Alignment:
| Q |
1 |
tttgttaggcatatgggaaaggtgtgattaatctctaagttgtagtataaatattctctcattttgtgtttgaatagctctgtgctttaggtactactgt |
100 |
Q |
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| T |
44204140 |
tttgttaggcatatgggaaaggtgtgattaatctctaagttgtagtataaatattctctcattttgtgtttgaataactctgtgctttaggtactactgt |
44204041 |
T |
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| Q |
101 |
ctatgtgtaagaaaac |
116 |
Q |
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| T |
44204040 |
ctatgtgtaagaaaac |
44204025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 44191873 - 44191764
Alignment:
| Q |
160 |
gtttaagtgtataaaagaaaggattatgcatcaactattttttcgcatcattttgaaaaggttcaaatatttgacatagtaattagagtttactaataaa |
259 |
Q |
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| T |
44191873 |
gtttacgtgtataaaagaaaggattatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaagtactttgagtttactaataaa |
44191774 |
T |
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| Q |
260 |
tgaattgtct |
269 |
Q |
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|||||||| |
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| T |
44191773 |
gtaattgtct |
44191764 |
T |
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