View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6383_low_11 (Length: 268)
Name: NF6383_low_11
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6383_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 8525449 - 8525319
Alignment:
| Q |
17 |
aaatattgtatttccaatttggatataaatatagacgttgtgttccttaaaatatcatccacacttagttttcaattgatcttcattcacataaaccatt |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8525449 |
aaatattgtattttcaatttggatataaatatagacgttgtgttccttaaaatatcatccacacttagtt-----------ttcattcacataaaccatt |
8525361 |
T |
|
| Q |
117 |
tggtaacactttccacaaaatcatttattcataatggtgtgg |
158 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8525360 |
tggtaacactttccacaaaatcatatattcataatggtgtgg |
8525319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 8525249 - 8525220
Alignment:
| Q |
228 |
catcattatgagagctctgctttgcttcat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8525249 |
catcattatgagagctctgctttgcttcat |
8525220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 25520646 - 25520752
Alignment:
| Q |
31 |
caatttggatataaatatagacgttgtgttccttaaaatatcatccacacttagttttcaattgatcttcattcacataaaccatttggtaacactttcc |
130 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||| || ||||||||||||| ||||| |||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
25520646 |
caatttggctataaatatttacgttgtgtcccttggcatttcatccacacttacttttctattgtttttcattcacataaaccatttagtaacactttcc |
25520745 |
T |
|
| Q |
131 |
acaaaat |
137 |
Q |
| |
|
| ||||| |
|
|
| T |
25520746 |
aaaaaat |
25520752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 42125780 - 42125748
Alignment:
| Q |
224 |
atgtcatcattatgagagctctgctttgcttca |
256 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
42125780 |
atgtcatcatgatgagagctctgctttgcttca |
42125748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University