View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6383_low_12 (Length: 243)

Name: NF6383_low_12
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6383_low_12
NF6383_low_12
[»] chr6 (3 HSPs)
chr6 (101-243)||(17702-17846)
chr6 (101-243)||(9941-10085)
chr6 (133-243)||(12667-12778)
[»] chr5 (4 HSPs)
chr5 (170-243)||(2643668-2643742)
chr5 (170-243)||(2315919-2315993)
chr5 (171-243)||(11015984-11016057)
chr5 (101-171)||(43584056-43584126)
[»] chr4 (4 HSPs)
chr4 (171-243)||(28071453-28071526)
chr4 (170-243)||(50063730-50063804)
chr4 (170-222)||(25516846-25516899)
chr4 (170-222)||(25536719-25536772)
[»] chr3 (6 HSPs)
chr3 (171-243)||(2544961-2545034)
chr3 (171-243)||(35127214-35127287)
chr3 (171-243)||(36429987-36430060)
chr3 (180-243)||(46278512-46278575)
chr3 (170-243)||(27221384-27221466)
chr3 (180-219)||(9291862-9291901)
[»] chr8 (4 HSPs)
chr8 (174-243)||(7840034-7840104)
chr8 (170-243)||(29668732-29668807)
chr8 (171-243)||(30735970-30736043)
chr8 (171-243)||(11676253-11676326)
[»] chr1 (4 HSPs)
chr1 (170-243)||(32060554-32060628)
chr1 (171-243)||(35754008-35754081)
chr1 (170-220)||(8081885-8081937)
chr1 (210-243)||(23552505-23552538)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 17846 - 17702
Alignment:
Q  101 tcacctgttgatttagaagaaaa-cggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaa-aaaaggaccggtaccgg 198  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17846 tcacctgttgatttagaagaaaaacggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaaaggaccggtaccgg 17747  T
Q  199 gattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  17746 gattgcggccgttacaaaacggtatcagcagccaccttgaccgtt 17702  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 10085 - 9941
Alignment:
Q  101 tcacctgttgatttagaagaaaa-cggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaa-aaaaggaccggtaccgg 198  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10085 tcacctgttgatttagaagaaaaacggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaaaggaccggtaccgg 9986  T
Q  199 gattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  9985 gattgcggccgttacaaaacggtatcagcagccacctttaccgtt 9941  T

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Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 12778 - 12667
Alignment:
Q  133 cgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagcc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12778 cgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagcc 12679  T
Q  232 accgtgaccgtt 243  Q
    ||| ||||||||    
T  12678 accttgaccgtt 12667  T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 2643742 - 2643668
Alignment:
Q  170 ccaaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2643742 ccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 2643668  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 2315993 - 2315919
Alignment:
Q  170 ccaaggtttcaaaaa-aggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2315993 ccaaggtttcaaaaacaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgatcgtt 2315919  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 11015984 - 11016057
Alignment:
Q  171 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  11015984 caaggtttcaaaaaacggaccggtaccggaattgcggacgttacaaaacggtatcagcggccaccgtgaccgtt 11016057  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 43584126 - 43584056
Alignment:
Q  101 tcacctgttgatttagaagaaaacggccggcgcgagcagttagacggtggccaaccaagtggacggctgcc 171  Q
    |||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  43584126 tcacctcttgagttagaagaatacggtcggcgcgagcagttagacggtggccaaccaagtggacggttgcc 43584056  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 28071526 - 28071453
Alignment:
Q  171 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071526 caaggtttcaaaaaacggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 28071453  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 50063730 - 50063804
Alignment:
Q  170 ccaaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50063730 ccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtcaccgtt 50063804  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 25516899 - 25516846
Alignment:
Q  170 ccaaggtttc-aaaaaaggaccggtaccgggattgcggccgttacaaaacggta 222  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25516899 ccaaggtttcgaaaaaaggaccggtaccgggattgcggccgttacaaaacggta 25516846  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 25536719 - 25536772
Alignment:
Q  170 ccaaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggta 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25536719 ccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggta 25536772  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 2544961 - 2545034
Alignment:
Q  171 caaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2544961 caaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 2545034  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 35127287 - 35127214
Alignment:
Q  171 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127287 caaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 35127214  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 36429987 - 36430060
Alignment:
Q  171 caaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429987 caaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 36430060  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 46278512 - 46278575
Alignment:
Q  180 aaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46278512 aaaaacggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaacgtgaccgtt 46278575  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 27221384 - 27221466
Alignment:
Q  170 ccaaggtttcaaaaaa-ggaccggtaccgggat----tgcggccgttacaaaacggta----tcagcagccaccgtgaccgtt 243  Q
    |||||||||||||||| ||||||||||||||||    |||||||||||||||||||||     ||||||||||||||||||||    
T  27221384 ccaaggtttcaaaaaaaggaccggtaccgggatggattgcggccgttacaaaacggtacagtacagcagccaccgtgaccgtt 27221466  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 9291862 - 9291901
Alignment:
Q  180 aaaaaaggaccggtaccgggattgcggccgttacaaaacg 219  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  9291862 aaaaacggaccggtaccgggattgcggccgttacaaaacg 9291901  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 7840104 - 7840034
Alignment:
Q  174 ggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7840104 ggtttcaaaaaacggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 7840034  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 29668732 - 29668807
Alignment:
Q  170 ccaaggtttcaaaaa--aggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29668732 ccaaggtttcaaaaataaggaccggtaccgggattgtggccgttacaaaacggtatcagcagccaccgtgaccgtt 29668807  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 30736043 - 30735970
Alignment:
Q  171 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30736043 caaggtttcaaaaaacggaccggtgccgggattgaggccgttacaaaacggtatcagcagccaccgtgaccgtt 30735970  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 11676253 - 11676326
Alignment:
Q  171 caaggtttcaaaaaag-gaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  11676253 caaggtttcaaaaaacagaccggtaccgggattgcggccgttacaaatcggtatcggcagccaccgtgaccgtt 11676326  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 32060628 - 32060554
Alignment:
Q  170 ccaaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32060628 ccaaggtttcaaaaaaaggaccggtgccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 32060554  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 35754008 - 35754081
Alignment:
Q  171 caaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35754008 caaggtttcaaaaaaaggacccgtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 35754081  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 8081885 - 8081937
Alignment:
Q  170 ccaaggtttcaaaa--aaggaccggtaccgggattgcggccgttacaaaacgg 220  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  8081885 ccaaggtttcaaaaaaaaggaccggtaccgggattacggccgttacaaaacgg 8081937  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 23552538 - 23552505
Alignment:
Q  210 ttacaaaacggtatcagcagccaccgtgaccgtt 243  Q
    ||||||||||||||||||||||||||||||||||    
T  23552538 ttacaaaacggtatcagcagccaccgtgaccgtt 23552505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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