View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6383_low_3 (Length: 405)
Name: NF6383_low_3
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6383_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 8478530 - 8478139
Alignment:
| Q |
1 |
aaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478530 |
aaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
8478431 |
T |
|
| Q |
101 |
cggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478430 |
cggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcttcaaacttcaacacacaacgaatcgatcacatctatgtcgatccaca |
8478331 |
T |
|
| Q |
201 |
caacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacgaagtttac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478330 |
caacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacgaagtttac |
8478231 |
T |
|
| Q |
301 |
aatctcgctgcacagtcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478230 |
aatctcgctgcacagtcacacgtcgcggtttcgtttgagattcccgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
8478139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 8486998 - 8486607
Alignment:
| Q |
1 |
aaaaccccagcaccgtcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
100 |
Q |
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|
||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8486998 |
aaaaccccaacaccatcaacaacaaacggcgacaccactccaccaccgcggaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaa |
8486899 |
T |
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| Q |
101 |
cggaattcctcctcaacaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccaca |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8486898 |
cagaattcctcctcaacaaaggctactccgtccacggcctaattcgtcgttcgtcaaacttcaacacacaacgaattgatcacatctatgtcgatccaca |
8486799 |
T |
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| Q |
201 |
caacgctcacaaagctcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacgaagtttac |
300 |
Q |
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| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
8486798 |
cgacgctcacaaagctcatatgaagcttcactatgccgatctctccgacgcttccgctctccgtcgctggctcgacactatcctccctgacgaagtttac |
8486699 |
T |
|
| Q |
301 |
aatctcgctgcacagtcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
392 |
Q |
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|| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
8486698 |
aacctcgccgcacagtctcatgtcgcggtttcgtttgagattcctgattacactgcagatgttgttgctactggtgctctccgtcttcttga |
8486607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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