View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6383_low_5 (Length: 336)
Name: NF6383_low_5
Description: NF6383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6383_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 127 - 326
Target Start/End: Original strand, 28630270 - 28630469
Alignment:
| Q |
127 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28630270 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
28630369 |
T |
|
| Q |
227 |
catatgtagttttatacttggccatatgtttagattaatagtttggaaatacattaatcatcatatgcttgtattgtagagctacaatattattgatatt |
326 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28630370 |
catatgtagttatatacttggccatatgtttagattaatagtttggaaatacattaatcatcatatgcttgtattgtagagctacaatattattgatatt |
28630469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 28630182 - 28630260
Alignment:
| Q |
18 |
acatcatcacgttcatgaggacaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaaacaat |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28630182 |
acatcatcacgttcatgaggacaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaagcaat |
28630260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 28615943 - 28616068
Alignment:
| Q |
94 |
aatgtaacaccatcatcaaatttttggattaaggaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctg |
193 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| | | |||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
28615943 |
aatgtaacacaatcttcaaatttttggattaagcaagctgctaatgagttattatcatttgataattgggatgagcttggatcagttgtgaattttgttt |
28616042 |
T |
|
| Q |
194 |
ttgattcacctagtttgtaaatagta |
219 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
28616043 |
cagattcacctagtatgtaaatagta |
28616068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University