View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6384_high_2 (Length: 476)
Name: NF6384_high_2
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 460
Target Start/End: Complemental strand, 1097644 - 1097181
Alignment:
| Q |
12 |
gttatagctttggttgaagattggtcagcaacaataacccatgatagagagaggtcaagaaagagttgagatttattnnnnnnntaagattgtcatattg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
1097644 |
gttatagctttggttgaagattggtcagcaacaataacccatgatagagagaggtcaagaaagagttgagatttattaaaaaaataagattatcatattg |
1097545 |
T |
|
| Q |
112 |
cttttcacaaatcgttgctttaaattgaggctattttttgttagtaaagctcgagtt-------------ggggatgcaatttctgggtttgaaacccat |
198 |
Q |
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| T |
1097544 |
cttttcacaaatcgttgctttaaattgaggctattttttgttagtaaagctcgagttcagaaaggggaggggggatgcaatttctgggtttgaaacccat |
1097445 |
T |
|
| Q |
199 |
aaatttaaagggaaagaagaatatccaattttattaatttgggatttttgttattttaatnnnnnnntattttttcgaatccaacaagggcttgccatca |
298 |
Q |
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| T |
1097444 |
aaatttaaagggaaagaagaatacccaattttattaatttgggatttttgttattttaataaaaatatattttttcgaatccaacaagggcttgccatca |
1097345 |
T |
|
| Q |
299 |
caacatttttaatacatgtcagcgttt--nnnnnnnntggaaaattggataacgaaaatgagtggcatcgtagccacacaaaaatgtattaggttaatgt |
396 |
Q |
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| T |
1097344 |
catcatttttaatacatgtcagcgtttaaaaaaaaaatggaaaattggataacgaaaatgagtggcatcgtagccacacaaaaatgtattaggttaatgt |
1097245 |
T |
|
| Q |
397 |
aatttgtatctaatagactcatgtatgcttataaatgcttgaatgaatataattatgtgataat |
460 |
Q |
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| T |
1097244 |
aatttgtatctaatagactcatgtatgcttataaatgcttgaatgaatataattatgtgataat |
1097181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 354 - 460
Target Start/End: Complemental strand, 1128941 - 1128821
Alignment:
| Q |
354 |
atgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtat--------------ctaatagactcatgtatgcttataaatgcttgaa |
439 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |
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| T |
1128941 |
atgagtggcattgtagccacacaacaatgtattaggttaatgtaatttgtatgcctaaaattctatctaatagactcatgtatgcttataaatgcataaa |
1128842 |
T |
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| Q |
440 |
tgaatataattatgtgataat |
460 |
Q |
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||||||||||||||||||||| |
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| T |
1128841 |
tgaatataattatgtgataat |
1128821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 1110791 - 1110725
Alignment:
| Q |
12 |
gttatagctttggttgaagattggtcagcaacaataacccatgatagagagaggtcaagaaagagtt |
78 |
Q |
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| T |
1110791 |
gttatagctttgattgaagattagtcagcaacaataagccatgatagagagagttcaagaaagagtt |
1110725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 1118251 - 1118202
Alignment:
| Q |
411 |
agactcatgtatgcttataaatgcttgaatgaatataattatgtgataat |
460 |
Q |
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| T |
1118251 |
agactcatgtatgcttataaatgcatgaatgaatataattatgtgataat |
1118202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 460
Target Start/End: Complemental strand, 1102912 - 1102796
Alignment:
| Q |
354 |
atgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgta--------------tctaatagactcatgtatgcttataaatgcttgaa |
439 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| | |
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| T |
1102912 |
atgagtggcattgtagccacacaaaaatgtattaggttgatgtaatttgtatgcctagaattgtctctaatagactcatgtatgcttacaaatgc----a |
1102817 |
T |
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| Q |
440 |
tgaatataattatgtgataat |
460 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1102816 |
tgaatataattatgtgataat |
1102796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 1118346 - 1118298
Alignment:
| Q |
357 |
agtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtat |
405 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1118346 |
agtggcattgtagccacacaaaaatgtattaggttaatgtaatttgtat |
1118298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 1110667 - 1110592
Alignment:
| Q |
96 |
taagattgtcatattgcttttcacaaatcgttgctttaaattgaggc---tattttttgttagtaaagctcgagtt |
168 |
Q |
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| T |
1110667 |
taagattatcatattgcttttcacaaatcattgctttaaatcgaggctcattttttttgttagtgaagctcgagtt |
1110592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 1087249 - 1087193
Alignment:
| Q |
400 |
ttgtatctaatagactcatgtatgcttataaatgcttgaatgaatataattatgtgataat |
460 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
1087249 |
ttgtatctaacagactcatgtatgcttataaatgc----attaatataattatgtgataat |
1087193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 1087309 - 1087258
Alignment:
| Q |
354 |
atgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtat |
405 |
Q |
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||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |
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| T |
1087309 |
atgagtggcattgtagcaacacaaaaaaatattaggttaatgtaatttgtat |
1087258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 8107907 - 8107847
Alignment:
| Q |
198 |
taaatttaaagggaaagaagaatatccaattttattaatttgggatttttgttattttaat |
258 |
Q |
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|||||||||||| || ||| || | |||| ||||||||||||||||||||||||||||||| |
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| T |
8107907 |
taaatttaaaggaaatgaaaaacacccaaatttattaatttgggatttttgttattttaat |
8107847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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