View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6384_high_4 (Length: 435)
Name: NF6384_high_4
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Complemental strand, 12197872 - 12197470
Alignment:
| Q |
20 |
aagatgggtgaaacaaatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatggagttgaagcacttcatgcaaatcccacataaatt |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
12197872 |
aagatgggtgaaacagatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatgaagttgaagcacttcctgcaaatcccacataaatt |
12197773 |
T |
|
| Q |
120 |
caaaggaatgcgcataaagaagccaagaa---gaaagattgcaagactctcttttatattatattcatcaatgcgtggataacaaggtatttggaaagat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
12197772 |
caaaggaatgcgcataaagaagccaagaacaagaaagatttcaagactctcttttatatt-----catcaatgcgtggataacaaggtatttgaaaagat |
12197678 |
T |
|
| Q |
217 |
tgcagatgcaaaaagctttaaggaagcttgggatatacttatgaaatacttcagtggggatgattaggtgaagaagataagattgcaatcattgagaaga |
316 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12197677 |
tgcatatgcaaaaagctttaaggaagcttgggatacacttgtgaaatacttcagtggggatgataaggtgaagaagataagattgcaatcattgagaaga |
12197578 |
T |
|
| Q |
317 |
caatatgaattgctaaagatgaagaaagaaaagaagatagaggaatatttctaatcaattaaaacaatcacaaatcagatgaagctatgtggtgagactc |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12197577 |
caatatgaattgctgaagatgaagaaagaaaagaacatagaggaatatttctaatcaattcaaacaatcacaaatcagatgaagctatgttgtgagactc |
12197478 |
T |
|
| Q |
417 |
tttctgat |
424 |
Q |
| |
|
|||||||| |
|
|
| T |
12197477 |
tttctgat |
12197470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 24 - 424
Target Start/End: Original strand, 33682222 - 33682616
Alignment:
| Q |
24 |
tgggtgaaacaaatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatggagttgaagcacttcatgcaaatcccacataaattcaaa |
123 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||| ||||||||||| |||||||||||| | |||||||||||| | ||| |||||||| |||| | |
|
|
| T |
33682222 |
tgggtgaaacagatgaaagtcatctttggatttcaatatgttcttgagcttgtcaacaatgaaattgaagcacttccagaaaaccccacatatgttcaga |
33682321 |
T |
|
| Q |
124 |
ggaatgcgcataaagaagccaagaagaaagattgcaagactctcttttatattatattcatcaatgcgtggataacaaggtatttggaaagattgcagat |
223 |
Q |
| |
|
| ||||| |||| ||||||||||||||| || ||||| |||||||||| || ||||| |||||||| |||||||| |||| |||||||||||| |
|
|
| T |
33682322 |
gaaatgcacatagagaagccaagaagaaggaacgcaaggctctcttttacgtt-----catcagtgcgtggacaacaaggtttttgagaagattgcagat |
33682416 |
T |
|
| Q |
224 |
gcaaaaagctttaaggaagcttgggatatacttatgaaatacttcagtggggatgattaggtgaagaagataagattgcaatcattgagaagacaatatg |
323 |
Q |
| |
|
|| |||| | |||||||| || |||| || | |||| || |||||||| ||| | | ||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
33682417 |
tcagaaagttacaaggaagcatgagatacacctgtgaagtatttcagtggagataacaaagtgaagaagattaggttacaatcattgagaagacaatatg |
33682516 |
T |
|
| Q |
324 |
aattgctaaagatgaagaaagaaaagaagatagaggaatatttctaatcaattaaaacaatcacaaatcagatgaagctatgtggtgagactctttctga |
423 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| || ||||||| || || || |||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
33682517 |
aattgctttagatgaagaaagaagaaaagatagaagattatttctcatatgtttaagcaatcacaaatcagat-aaactatgtggtgagacactttctga |
33682615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 24 - 424
Target Start/End: Original strand, 33699276 - 33699670
Alignment:
| Q |
24 |
tgggtgaaacaaatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatggagttgaagcacttcatgcaaatcccacataaattcaaa |
123 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||| ||||||||||| |||||||||||| | |||||||||||| | ||| |||||||| |||| | |
|
|
| T |
33699276 |
tgggtgaaacagatgaaagtcatctttggatttcaatatgttcttgagcttgtcaacaatgaaattgaagcacttccagaaaaccccacatatgttcaga |
33699375 |
T |
|
| Q |
124 |
ggaatgcgcataaagaagccaagaagaaagattgcaagactctcttttatattatattcatcaatgcgtggataacaaggtatttggaaagattgcagat |
223 |
Q |
| |
|
| ||||| |||| ||||||||||||||| || ||||| |||||||||| || ||||| |||||||| |||||||| |||| |||||||||||| |
|
|
| T |
33699376 |
gaaatgcacatagagaagccaagaagaaggaacgcaaggctctcttttacgtt-----catcagtgcgtggacaacaaggtttttgagaagattgcagat |
33699470 |
T |
|
| Q |
224 |
gcaaaaagctttaaggaagcttgggatatacttatgaaatacttcagtggggatgattaggtgaagaagataagattgcaatcattgagaagacaatatg |
323 |
Q |
| |
|
|| |||| | |||||||| || |||| || | |||| || |||||||| ||| | | ||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
33699471 |
tcagaaagttacaaggaagcatgagatacacctgtgaagtatttcagtggagataacaaagtgaagaagattaggttacaatcattgagaagacaatatg |
33699570 |
T |
|
| Q |
324 |
aattgctaaagatgaagaaagaaaagaagatagaggaatatttctaatcaattaaaacaatcacaaatcagatgaagctatgtggtgagactctttctga |
423 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| || ||||||| || || || |||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
33699571 |
aattgctttagatgaagaaagaagaaaagatagaagattatttctcatatgtttaagcaatcacaaatcagat-aaactatgtggtgagacactttctga |
33699669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 12832358 - 12832580
Alignment:
| Q |
20 |
aagatgggtgaaacaaatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatggagttgaagcacttcatgcaaatcccacataaatt |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| || ||||| ||| | ||||||||||||||| | || ||||||||||||| || || |
|
|
| T |
12832358 |
aagatgggtgaaacaaatgaagatgatctttgggttttaagaagtgcttgaaattattaacaatggagttgaacctct--ctgcaaatcccacagaagtt |
12832455 |
T |
|
| Q |
120 |
caaaggaatgcgcataaagaagccaagaagaaagattgcaagactctcttttatattatattcatcaatgcgtggataacaaggtatttggaaagattgc |
219 |
Q |
| |
|
|| || |||||||||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
12832456 |
cagagaaatgcgcatagagaagccaagaagaaagattgcaaggctctctt-----ctacattcatcaatgcgtggacaacaaggtgtttgaaaagattgg |
12832550 |
T |
|
| Q |
220 |
agatgcaaaaagctttaaggaagcttggga |
249 |
Q |
| |
|
|||| | |||||| ||||||||| ||||| |
|
|
| T |
12832551 |
tgatgtagaaagctctaaggaagcatggga |
12832580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 424
Target Start/End: Original strand, 14637371 - 14637664
Alignment:
| Q |
126 |
aatgcgcataaagaagccaagaagaaagattgcaagactctcttttatattatattcatcaatgcgtggataacaaggtatttggaaagattgcagatgc |
225 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||| | |||||||| |||| ||||||| || | |
|
|
| T |
14637371 |
aatgcacacaaagaagccaagaagaaagattgcaagggtctcttttacatt-----catcagtgcgtgcacaacaaggtgtttgagaagattgttaattc |
14637465 |
T |
|
| Q |
226 |
aaaaagctttaaggaagcttgggatatacttatgaaatacttcagtggggatgattaggtgaagaagataagattgcaatcattgagaagacaatatgaa |
325 |
Q |
| |
|
| | || | |||||||| | |||| ||| |||| || |||||||| ||||| | || |||||||| || | || ||||||||||||||||| || |
|
|
| T |
14637466 |
agatagttccaaggaagcataagatactcttgtgaagtatttcagtggagatgacaaagtaaagaagattaggctacagtcattgagaagacaatactaa |
14637565 |
T |
|
| Q |
326 |
ttgctaaagatgaagaaagaaaagaagatagaggaatatttctaatcaattaaaacaatcacaaatcagatgaagctatgtggtgagactctttctgat |
424 |
Q |
| |
|
|| || |||||||||||||| | |||||| | || ||||||| ||| || |||||||||||| ||||||||| | |||||||||||||||| |||| |
|
|
| T |
14637566 |
ttactttagatgaagaaagaagataagataaaagattatttctcatctgttctaacaatcacaaagcagatgaagatttgtggtgagactctttttgat |
14637664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 2228798 - 2228861
Alignment:
| Q |
26 |
ggtgaaacaaatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatggagtt |
89 |
Q |
| |
|
||||||||| |||||| | |||||| |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
2228798 |
ggtgaaacagatgaagttaatctttaggtttcaagatgttattgagattgttaacaatggagtt |
2228861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 2740522 - 2740591
Alignment:
| Q |
23 |
atgggtgaaacaaatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatggagttgaa |
92 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| | ||||| |||| ||||||||||||||| |
|
|
| T |
2740522 |
atgggtgaaacaaatgaaggtgatttttgaatttcaagacatgcttgaagttgttaacaatggagttgaa |
2740591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University