View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6384_high_5 (Length: 348)
Name: NF6384_high_5
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 38850906 - 38850570
Alignment:
| Q |
1 |
tttgattaatacttacaatttcaaggatcagtttgtgaactcactattcnnnnnnnctatctttgtgatttgtttttcaaatgtactatgaataaggatc |
100 |
Q |
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| T |
38850906 |
tttgattaatacttacaatttcaaggatcagtttgtgaactcactattcaaagaaactatctttgtgatttgtttttcaaatgtactatgaataaggatc |
38850807 |
T |
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| Q |
101 |
atagaaactaattggattttatggtgcagggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttaccc |
200 |
Q |
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| T |
38850806 |
atggaaactaattggattttatggtgcagggagcattgtctactgctgcagtattttgtttacaatcatgggcaatgactatcaagggacctacttaccc |
38850707 |
T |
|
| Q |
201 |
ttcaatgttcaatccacttgcacttgtttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatacttttccttc |
300 |
Q |
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| T |
38850706 |
ttcaatgttcaatccacttgcacttgtttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatacttttccttc |
38850607 |
T |
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| Q |
301 |
ttaccattaattataacaattttcatttcttctctgt |
337 |
Q |
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| T |
38850606 |
ttaccgttaattataacaattttcatttcttctctgt |
38850570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 328
Target Start/End: Complemental strand, 29222849 - 29222653
Alignment:
| Q |
128 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
227 |
Q |
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| T |
29222849 |
agggagcattggctacagctgctacattttgtttactaacatgggcaattaaaattaagggacctactttccctccaatgttcaatccattggctcttgt |
29222750 |
T |
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| Q |
228 |
ttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatacttttccttcttaccattaattataacaattttcatt |
327 |
Q |
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| T |
29222749 |
tttcgttgccatatctgacactatcatacttggtgaaccactcaaagttggaacgtatgaatatttttccctctt----cttattataacaattttcatt |
29222654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 291
Target Start/End: Original strand, 29148025 - 29148188
Alignment:
| Q |
128 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
227 |
Q |
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| T |
29148025 |
agggagcattggctactgctgctacattttgtttactatcatgggcaattaccattaaaggacctacttaccctccgatgtttaatccgttggctcttat |
29148124 |
T |
|
| Q |
228 |
ttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatac |
291 |
Q |
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| T |
29148125 |
tttcgttgccatatcagaggctatcatacttggcgaaccgttaagggttggaacgtatgaatac |
29148188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 128 - 300
Target Start/End: Complemental strand, 5302869 - 5302697
Alignment:
| Q |
128 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
227 |
Q |
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||||||||||| ||||||||||| ||||||||||| ||||||||| || || ||||||||||||| ||| ||| ||||||||||||||||| || || |
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| T |
5302869 |
agggagcattggctactgctgcaacattttgtttactatcatgggcgatcacaatcaagggacctagttatcctccaatgttcaatccactttgtctagt |
5302770 |
T |
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| Q |
228 |
ttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatacttttccttc |
300 |
Q |
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| T |
5302769 |
ttttgttgccatttcagaagctttcatacttggtgaaccactcaaagttggaacgtaagaatacttttccttc |
5302697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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