View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6384_low_1 (Length: 747)
Name: NF6384_low_1
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 11 - 729
Target Start/End: Complemental strand, 1960502 - 1959816
Alignment:
| Q |
11 |
atcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgtt |
110 |
Q |
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| T |
1960502 |
atcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgtt |
1960403 |
T |
|
| Q |
111 |
agtaatgtaaaaatatcagaaaacatgaaaacagtgatttattatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960402 |
agtaatgtaaaaatatcagaaaacatgaaaacagtgatttgttatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagt |
1960303 |
T |
|
| Q |
211 |
taagaataatatcaaaccaacctgatatttcttaatagcttgttgttcgtcctcaatcatctttgattcctgctcaagcttccgagcaatgtaatccttt |
310 |
Q |
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| T |
1960302 |
taagaataatatcaaaccaacctgata-------ata--ttcttat-cgtcctcaatcatctttgattcctgctcaagcttccgagcaatgtaatccttt |
1960213 |
T |
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| Q |
311 |
atcacagaaaatgtgaggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagattatccctctcaatgcaattcaaaacttctttta |
410 |
Q |
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| T |
1960212 |
atcacagaaaatgtgaggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagattatccctctcaatgcaattcaaaacttctttta |
1960113 |
T |
|
| Q |
411 |
cttctttggagcaatcttatccaagcacaccaaaatatttgagtacatcagctcagagatagatcccctcctttaacagaatcaccatcttttgcaacat |
510 |
Q |
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| T |
1960112 |
cttctttggagcaatcttatcaaagcacaccaaaata----------------------tagatccccgcctttaacagaatcaccatcttttgcaacat |
1960035 |
T |
|
| Q |
511 |
gcagtcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagca |
610 |
Q |
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| T |
1960034 |
gcaatcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagca |
1959935 |
T |
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| Q |
611 |
caagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgt |
710 |
Q |
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| T |
1959934 |
caagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgt |
1959835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 548 - 729
Target Start/End: Original strand, 2023328 - 2023509
Alignment:
| Q |
548 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctat |
647 |
Q |
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| T |
2023328 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctat |
2023427 |
T |
|
| Q |
648 |
aaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaaga |
729 |
Q |
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| T |
2023428 |
aaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaaga |
2023509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 5e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 227 - 532
Target Start/End: Complemental strand, 5897001 - 5896692
Alignment:
| Q |
227 |
ccaacctgatatttcttaatagcttgttgttcgtcctcaatcatctttgattcctgctcaagcttccgagcaatgtaatcctttatcacagaaaatgtga |
326 |
Q |
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|||||||||||||||| |||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
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| T |
5897001 |
ccaacctgatatttctcaatagcttgtcggtcctcctcaatcacctttgattcctgctcaagcttccgagcaatgtaatccttgatcactgaaagtgtga |
5896902 |
T |
|
| Q |
327 |
ggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagattatccctctcaatgcaattcaaaacttcttttacttctttggagcaatc |
426 |
Q |
| |
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||||||| || ||||||||||||||||||| ||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
5896901 |
ggcaagggttttttgacagagtttgaaggacaattatggggggtaaaatattatccctttcaatgtaattcaaaacttcttttacttctttggagcaatc |
5896802 |
T |
|
| Q |
427 |
ttatccaagcacaccaaaatatttgagtacatcagctc--agagatagatcccctcctttaacagaatcacc--atcttttgcaacatgcagtcaatccc |
522 |
Q |
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| T |
5896801 |
ttctccaagctcaccaaaatatttgagtacatccgcccaaagagatggatcccctcctttaactgaatcacccagtcttttgcagcatgcaattaatccg |
5896702 |
T |
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| Q |
523 |
tcgtgatcat |
532 |
Q |
| |
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| |||||||| |
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| T |
5896701 |
ttgtgatcat |
5896692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 5897205 - 5897143
Alignment:
| Q |
35 |
ttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttt |
97 |
Q |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||| |
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| T |
5897205 |
ttcataactaaaccatagtcttatccactatcggtgtctattgtatggaaatcatcatgcttt |
5897143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 5897063 - 5897030
Alignment:
| Q |
182 |
agacaaatacataagttatcaaataaagttaaga |
215 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
5897063 |
agacaaatacataagctatcaaataaagttaaga |
5897030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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