View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6384_low_3 (Length: 451)
Name: NF6384_low_3
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 53403799 - 53403367
Alignment:
| Q |
18 |
tatttgggcacacataaacac--tttatgttgggattctggctataagaaagtgttgtgtctctcagactcaacatgatgaaattgaaaggtattgggtt |
115 |
Q |
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| T |
53403799 |
tatttgggcacacatacacacactttatgttgggattctggctataagaaagtgttgtgtctctcagactcaacatgatgaaattgaaatgtattgggtt |
53403700 |
T |
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| Q |
116 |
gggcctgactgtgggtgtgtatttaatcacaaaaaattgggatcttattgggtttgaacgtgtttcacaaatgtggatggttaatttgcaacacactttg |
215 |
Q |
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| T |
53403699 |
gggcctgactgtgggtgtgtatttcatcacaaaaaattgggatcttattgggtttgaatgtgtttcacaaatgtggatggttaatttgcaacacactttg |
53403600 |
T |
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| Q |
216 |
cgtgaggataatgctacagctgactttatagtaacaatcacataagtattttcattcacattgttgtttataattatgcattgaacatacggaaacagaa |
315 |
Q |
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| T |
53403599 |
cgtgaggataatgctacagctgactttatagtaacaatcacataagtattttcattcacattgttgtttataattatgcattgaacatacggaaacagaa |
53403500 |
T |
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| Q |
316 |
------------taacaccaacgtattcatattcatattcatataaaaatatgaaggaagatggaaagaatgggagaacctctgttttaggagtgaagaa |
403 |
Q |
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| T |
53403499 |
ccatagttaacttaacaccaa------cttattcatattcatataaaaatatgaaggaagatggaaagaatgggagaacctctgttttaggagtgaagaa |
53403406 |
T |
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| Q |
404 |
tgaagatggaaacggaggatgattctttgtcacaggttc |
442 |
Q |
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| T |
53403405 |
tgaagatggaaacggaggatgattcttcgtcagaggttc |
53403367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 333 - 442
Target Start/End: Original strand, 53376216 - 53376325
Alignment:
| Q |
333 |
tattcatattcatataaaaatatgaaggaagatggaaagaatgggagaacctctgttttaggagtgaagaatgaagatggaaacggaggatgattctttg |
432 |
Q |
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| T |
53376216 |
tattcatattcatataaaaatatgaaggaagatggaaagaaggggagaacctctgttttaggagtgaagaatgaagatggaaacggaggatgattcttcg |
53376315 |
T |
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| Q |
433 |
tcacaggttc |
442 |
Q |
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||| |||||| |
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| T |
53376316 |
tcagaggttc |
53376325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 53375203 - 53375273
Alignment:
| Q |
18 |
tatttgggcacacataaacactttatgttgggattctggctataagaaagtgttgtgtctctcagactcaa |
88 |
Q |
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| T |
53375203 |
tatttgggcacacatacacactttatgttgggattctggctataagaaagtgttgtgtctctcagactcaa |
53375273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 53375974 - 53376077
Alignment:
| Q |
90 |
atgatgaaattgaaaggtattgggttgggcctgactgtgggtgtgtatttaatcac-aaaaaattgggatcttattgggtttgaacgtgtttcacaaatg |
188 |
Q |
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| T |
53375974 |
atgatgaaatttaaaggcattgggttgggcctgactgtgggtgtgtattttatcacaaaaaaattgtgctggtattgggtttgaatgtgtttcacagatg |
53376073 |
T |
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| Q |
189 |
tgga |
192 |
Q |
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|||| |
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| T |
53376074 |
tgga |
53376077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 11392358 - 11392324
Alignment:
| Q |
54 |
tggctataagaaagtgttgtgtctctcagactcaa |
88 |
Q |
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| T |
11392358 |
tggctataagaaagtgttgtgtctctcagactcaa |
11392324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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