View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6384_low_6 (Length: 316)
Name: NF6384_low_6
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 1959852 - 1959567
Alignment:
| Q |
20 |
aacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgatacacacaacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959852 |
aacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgatacacacaacaa |
1959753 |
T |
|
| Q |
120 |
aggtggtttaacatgtatacaatataattaaaataactttgtagcattccatcaagtaagaggacagcagtgattaagattatagggatacaaacctatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959752 |
aggtggtttaacatgtatacaatataattcaaataactttgtagcattccatcaagtaagaggacagcagtgattaagattatagggatacaaacctatt |
1959653 |
T |
|
| Q |
220 |
ttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaagaccgattcccaattcgaccgatctagtata |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1959652 |
ttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaagaccgattcccaattcgaccaatctagtata |
1959567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 2023473 - 2023612
Alignment:
| Q |
20 |
aacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgatacacacaacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2023473 |
aacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcctttgccatatttcaagattggaaatttctgatacacacaataa |
2023572 |
T |
|
| Q |
120 |
aggtggtttaacatgtatacaatataattaaaataacttt |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2023573 |
aggtggtttaacatgtatgcaatataattaaaataacttt |
2023612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 165 - 305
Target Start/End: Original strand, 2023807 - 2023944
Alignment:
| Q |
165 |
attccatcaagtaagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctga |
264 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| | || || |
|
|
| T |
2023807 |
attccatcaagtcagaggacagcaacaattaagattatagggatacaaacctattttcttgaggactacaagaaccttgtgaacatcatg---tacccga |
2023903 |
T |
|
| Q |
265 |
ttataggtaagaccgattcccaattcgaccgatctagtata |
305 |
Q |
| |
|
||||||| |||| ||||||||| | ||| ||||||||||| |
|
|
| T |
2023904 |
ttatagggcagactgattcccaacttgactgatctagtata |
2023944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University