View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6384_low_7 (Length: 279)
Name: NF6384_low_7
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 3215124 - 3215377
Alignment:
| Q |
19 |
gaagtaagctcgaagattacaatgcacgttttcatactcttcaatacttacatttattccttaatataatagtatcatgctatgattaatttcttttgcc |
118 |
Q |
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| T |
3215124 |
gaagtaagctcgaagattacaatgcacgttttcatactcttcaatacttacatttattccttaatataatagtatcatgctatgattaatttcttttgcc |
3215223 |
T |
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| Q |
119 |
aaattttcacacaaaaatgacagatatagggattctaacggtatactttccagaaacccacttgatagatccctgagaaatttccttatcacctctattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215224 |
aaattttcacacaaaaatgacagatatagggattctaacggtatactttccagaaacccacttgatagatccctgagaaatttccttatcacctctattc |
3215323 |
T |
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| Q |
219 |
actaagttttcgggtgtaaaagcaaccgagtatgtaactttttgcttcatctca |
272 |
Q |
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| T |
3215324 |
actatgttttcgggtgtaaaagcaaccgagtatgtaactttttgcttcttctca |
3215377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 3201265 - 3201462
Alignment:
| Q |
70 |
atttattccttaatataatagtatcatgctatgattaatttcttttgccaaattttcacacaaaaatgacagatatagggattctaacggtatactttcc |
169 |
Q |
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| T |
3201265 |
atttattccttaacataataatgtcatgctctaattaatttattttgccacattttcacacaaatacgacagcaataggaatgctaacagaatactttgc |
3201364 |
T |
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| Q |
170 |
agaaacccacttgatagatccctgagaaatttccttatcacctctattcactaagttttcgggtgtaaaagcaaccgagtatgtaactttttgcttca |
267 |
Q |
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| T |
3201365 |
agaaatccacttgatagatccttgagcaataaagttatcacctctattctctttgtcttcaggtataaaatcaacccaatatgttaccttttgcttca |
3201462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 3207313 - 3207441
Alignment:
| Q |
144 |
atagggattctaacggtatactttccagaaacccacttgatagatccctgagaaatttccttatcacctctattcactaagttttcgggtgtaaaagcaa |
243 |
Q |
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||||| || ||||| | ||||||| |||||||||| |||||||| || |||| ||| ||||||||||||||| || | ||| ||| ||||| ||| |
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| T |
3207313 |
ataggaatgctaacagaatactttgcagaaacccatttgatagagccttgagcaataaagttatcacctctattctctttatcttcaggtataaaatcaa |
3207412 |
T |
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| Q |
244 |
ccgagtatgtaactttttgcttcatctca |
272 |
Q |
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| T |
3207413 |
cccaatatgttaccttttgcttcatctca |
3207441 |
T |
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