View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6384_low_8 (Length: 269)
Name: NF6384_low_8
Description: NF6384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6384_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 6130266 - 6130496
Alignment:
| Q |
20 |
gggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttgaata |
119 |
Q |
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| T |
6130266 |
gggcctaattcagctgcgaggtgtagtaagttatttccaaatatgtctacggacgttttaagccctttttggccatctatctcatatatgagtttgaaca |
6130365 |
T |
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| Q |
120 |
ctctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttccttcatattatttat |
219 |
Q |
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| T |
6130366 |
ctttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccattgcccataaaaggtcaggatttgcttccctcattgaatttat |
6130465 |
T |
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| Q |
220 |
aaactctacaattccatacttggctgcttgt |
250 |
Q |
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| T |
6130466 |
aaactctataattccatacttggctgcttgt |
6130496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 6105563 - 6105330
Alignment:
| Q |
17 |
gaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttga |
116 |
Q |
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| T |
6105563 |
gaagggcctaactcagctgcgaggtgtaataagttattttcaaatatgtctttggtagttttcaactctttttggccttccatctcgtatatgagtttga |
6105464 |
T |
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| Q |
117 |
atactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttccttcatattatt |
216 |
Q |
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| T |
6105463 |
acactttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtatttgtccatggcccataaaaggtcaggatttgcttccctcattgaatt |
6105364 |
T |
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| Q |
217 |
tataaactctacaattccatacttggctgcttgt |
250 |
Q |
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| T |
6105363 |
tataaactctataattccatacttggctgcttgt |
6105330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 6860707 - 6860945
Alignment:
| Q |
12 |
aagaagaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgag |
111 |
Q |
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| T |
6860707 |
aagaggaagggcctaattcagctgcaaggtggagtaagttgtttccaaatatgtctatggatgttttcaacccttcatggccttcaatcttatatacgag |
6860806 |
T |
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| Q |
112 |
tttgaatactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttccttcata |
211 |
Q |
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| T |
6860807 |
tctgaagacactggctttacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccatagcatataaaaggtcaggatttgcttccctcatt |
6860906 |
T |
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| Q |
212 |
ttatttataaactctacaattccatacttggctgcttgt |
250 |
Q |
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| T |
6860907 |
gaatttataaactctaaagttccatgcttggctgcttgt |
6860945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 11791830 - 11791891
Alignment:
| Q |
134 |
ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcagg |
195 |
Q |
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| T |
11791830 |
ttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagcccataagaggtcagg |
11791891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 11836078 - 11836139
Alignment:
| Q |
134 |
ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcagg |
195 |
Q |
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| T |
11836078 |
ttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagaccataagaggtcagg |
11836139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 11883743 - 11883807
Alignment:
| Q |
134 |
ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatt |
198 |
Q |
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| T |
11883743 |
ttcaaaattgcatgtgaaaatacgcctcttttatttttatcaatggcccataagaggtcaggatt |
11883807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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