View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6385_high_1 (Length: 395)
Name: NF6385_high_1
Description: NF6385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6385_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 107 - 256
Target Start/End: Complemental strand, 2255526 - 2255377
Alignment:
| Q |
107 |
gacaatggagtacttatttattttt-attagggcatagattaaatgtgatcaattaccttttttaatatgtgtaatttaaccannnnnnnncttataatt |
205 |
Q |
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| T |
2255526 |
gacaatggagtacttatttattttttattagggcatagattaaatgtgatcaattaccttttttaatatgtgtaatttaacca-tttttttcttataatt |
2255428 |
T |
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| Q |
206 |
tgagtattattaaactcaaaattaaagagaataactaaatatatgctatgt |
256 |
Q |
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| T |
2255427 |
tgagtattattaaactcaaaattaaagagaataactaaatatatgctatgt |
2255377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 270 - 377
Target Start/End: Complemental strand, 2255394 - 2255287
Alignment:
| Q |
270 |
actaaatatatgctatgtgacaggttccactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatggaa |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2255394 |
actaaatatatgctatgtgacaggttccactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatggaa |
2255295 |
T |
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| Q |
370 |
ctgttgac |
377 |
Q |
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|||||||| |
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| T |
2255294 |
ctgttgac |
2255287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 2275444 - 2275364
Alignment:
| Q |
290 |
caggttccactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatggaac |
370 |
Q |
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| T |
2275444 |
caggtttcactcattgcaccatactcagtttagaacaaactactcactcttcatgccactttatgactacatttatggaac |
2275364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 367
Target Start/End: Original strand, 35381157 - 35381235
Alignment:
| Q |
289 |
acaggttccactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatgg |
367 |
Q |
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||||||| |||||||||||||| || ||||| || ||||||| ||||| |||||||| || ||||| ||||| ||||| |
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| T |
35381157 |
acaggtttcactcattgcatcacaccaaatttaggtctaattactcactcttcatgcctatatatgactacatttatgg |
35381235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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