View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6385_low_3 (Length: 325)
Name: NF6385_low_3
Description: NF6385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6385_low_3 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 325
Target Start/End: Complemental strand, 2272282 - 2271963
Alignment:
| Q |
6 |
gatggacatcatcaggcgtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatg |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272282 |
gatggccatcatcaggcgtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatg |
2272183 |
T |
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| Q |
106 |
ctcaattttgtgttgtgggttgccaccaacatgagcctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtg |
205 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2272182 |
ctcaattttgtgttgcgggttgccaccaacatgagtctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcattttcttgtg |
2272083 |
T |
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| Q |
206 |
gatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttaca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
2272082 |
gatcgattttcctacagtttctcctgagaatttaacagaccatttagctcagtttgggagtttagttgatttatcgaaatcaaagaaatctctccttaca |
2271983 |
T |
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| Q |
306 |
atgatttggtgcgctactac |
325 |
Q |
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|||||||||||||||||||| |
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| T |
2271982 |
atgatttggtgcgctactac |
2271963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 22676 - 22376
Alignment:
| Q |
23 |
gtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatgctcaattttgtgttgtg |
122 |
Q |
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|||||| ||||||||| |||||||| | || |||| |||| || || ||||||| || |||| ||| |||||| |||||||||||||| ||| ||| |
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| T |
22676 |
gtctctgtttgtttggtgactacttcgaaatagattgcctacaaagaacaatttatgcaagcgaggaattcttcatcaggatgctcaattttatgtcgtg |
22577 |
T |
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| Q |
123 |
ggttgccaccaacatgagcctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacag |
222 |
Q |
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|||||| |||||| || ||||| || |||| ||| | || || ||||||| | || ||||||||||| |||| |||||||| | ||| ||||| |
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| T |
22576 |
ggttgcggccaacaaaagtctgcaaagcatctttttttacaacgtcctttgttcgatttcttatggagcgatgttttggtgtggattggatttattacag |
22477 |
T |
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| Q |
223 |
tttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgcgctac |
322 |
Q |
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||||||| |||||| |||| | ||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||| |||||||||| |
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| T |
22476 |
tttctcccgagaatgcaacaaatcatttagctcagtttgggagtttagctagtatatcgaaatcaaagagatctctcctcacattgattcggtgcgctac |
22377 |
T |
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| Q |
323 |
t |
323 |
Q |
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| |
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| T |
22376 |
t |
22376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 23787557 - 23787446
Alignment:
| Q |
178 |
gttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagttt |
277 |
Q |
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|||||||||||| ||| |||||||||||||| || |||| | |||||||||| | |||||| |||| |||||| | |||||| ||||||||||||| | |
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| T |
23787557 |
gttccttatggaacggtatttttgtgtggattgactttctttcagtttctccaaataatttatcagatcatttaattcagtttgagagtttagctagtat |
23787458 |
T |
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| Q |
278 |
atcgaaatcaaa |
289 |
Q |
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|||||||||||| |
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| T |
23787457 |
atcgaaatcaaa |
23787446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 317
Target Start/End: Original strand, 12162860 - 12163034
Alignment:
| Q |
142 |
ctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaac |
241 |
Q |
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|||||||| |||| ||||| |||||| |||||| |||||||||||||||| |||| ||||||||| |||| |||| | ||| | |||||| |||| |
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| T |
12162860 |
ctgcagagcatctttttctacagtgtcttttgtttggttccttatggagcgatgttttggtgtggatcagatttcttacaatatcttcggagaatgtaac |
12162959 |
T |
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| Q |
242 |
agaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgc |
317 |
Q |
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||| ||| || || | |||| |||||||||| || || | ||||| |||| ||||||||| ||| |||||| |||| |
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| T |
12162960 |
agatcatctaactcaatttgagagtttagctggtata-caaaatctaagagatctctcctcacattgatttagtgc |
12163034 |
T |
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