View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6385_low_5 (Length: 226)

Name: NF6385_low_5
Description: NF6385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6385_low_5
NF6385_low_5
[»] chr4 (11 HSPs)
chr4 (1-226)||(3932943-3933168)
chr4 (1-226)||(3817520-3817745)
chr4 (1-226)||(3919719-3919944)
chr4 (129-224)||(3987059-3987154)
chr4 (121-226)||(3810072-3810177)
chr4 (157-226)||(3801678-3801747)
chr4 (145-226)||(4010076-4010157)
chr4 (138-226)||(4025299-4025387)
chr4 (157-226)||(4218735-4218804)
chr4 (138-226)||(4002372-4002460)
chr4 (1-53)||(3809940-3809992)
[»] chr5 (1 HSPs)
chr5 (138-226)||(13398023-13398111)
[»] scaffold1360 (1 HSPs)
scaffold1360 (197-226)||(1938-1967)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3933168 - 3932943
Alignment:
Q  1 tcatcaagaacaataagaactttcatgcggccgatccatctctcaataccactggacaattctttcacagattctttcaatagttcagataaaaggcttt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3933168 tcatcaagaacaataagaactttcatgcggccgatccgtctctcaataccactggacaattctttaacagattctttcaatagttcagataaaaggcttt 3933069  T
Q  101 cctttaaagatccaatcccaccatgtgtttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttc 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3933068 cctttaaagatccaatcccaccatgtgcttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttc 3932969  T
Q  201 ttctgcaatagttgtcttgccaatac 226  Q
    ||||||||||||||||||||||||||    
T  3932968 ttctgcaatagttgtcttgccaatac 3932943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3817520 - 3817745
Alignment:
Q  1 tcatcaagaacaataagaactttcatgcggccgatccatctctcaataccactggacaattctttcacagattctttcaatagttcagataaaaggcttt 100  Q
    ||||||||||| |||||||| ||||||||||  |||| |||||  ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  3817520 tcatcaagaacgataagaaccttcatgcggctaatccgtctctttatatcaccggacaattctttcacagactctttcaatagttcagataaaaggcttt 3817619  T
Q  101 cctttaaagatccaatcccaccatgtgtttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttc 200  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817620 cctttaaacatccaactccaccatgtgtttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttc 3817719  T
Q  201 ttctgcaatagttgtcttgccaatac 226  Q
    ||||||||||||||||||||||||||    
T  3817720 ttctgcaatagttgtcttgccaatac 3817745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3919944 - 3919719
Alignment:
Q  1 tcatcaagaacaataagaactttcatgcggccgatccatctctcaataccactggacaattctttcacagattctttcaatagttcagataaaaggcttt 100  Q
    ||||||||||| |||||||| ||||||||||  |||| |||||  ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  3919944 tcatcaagaacgataagaaccttcatgcggctaatccgtctctttatatcaccggacaattctttcacagactctttcaatagttcagataaaaggcttt 3919845  T
Q  101 cctttaaagatccaatcccaccatgtgtttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttc 200  Q
    |||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3919844 cctttaaacatccaactccaccatgtgcttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttc 3919745  T
Q  201 ttctgcaatagttgtcttgccaatac 226  Q
    ||||||||||||||||||||||||||    
T  3919744 ttctgcaatagttgtcttgccaatac 3919719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 3987059 - 3987154
Alignment:
Q  129 ttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaat 224  Q
    ||||||| ||||||| |||||| |||| ||||||||||||||||| || || ||||||||| |||| |||||||||||||||||||||||||||||    
T  3987059 ttttaacttttcactcacctttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaat 3987154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 3810072 - 3810177
Alignment:
Q  121 ccatgtgtttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgc 220  Q
    |||||| || |||||  |||||| ||||||||||||||||||||||||||||| || |||| | |||||  ||||| ||||| |||||||||||||||||    
T  3810072 ccatgtcttgttaactcttcacttaccttttccaagaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgc 3810171  T
Q  221 caatac 226  Q
    ||||||    
T  3810172 caatac 3810177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 3801678 - 3801747
Alignment:
Q  157 aaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaatac 226  Q
    ||||||||||||||||| ||  | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  3801678 aaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtcttgccaatac 3801747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 4010076 - 4010157
Alignment:
Q  145 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaatac 226  Q
    ||||||||||| ||||||||||| ||||| || || | ||||||| |||| |||||| ||||||||||||||||||||||||    
T  4010076 accttttccaaaaaacaacaaccttcatattcagagcaattttggttaaaaatttctcctgcaatagttgtcttgccaatac 4010157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 4025299 - 4025387
Alignment:
Q  138 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaatac 226  Q
    |||||| |||||| |||| ||||||||||| ||||| || || | ||||||  |||| |||||||| ||||||||||||||||||||||    
T  4025299 ttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatac 4025387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 4218735 - 4218804
Alignment:
Q  157 aaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaatac 226  Q
    ||||||||||||||||| || |||| | |||||  ||||| ||||| |||||||||||||||||||||||    
T  4218735 aaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaatac 4218804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 4002372 - 4002460
Alignment:
Q  138 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaatac 226  Q
    |||||| ||||||||||| |||||| |||| ||||| || || | | || || |||| | |||||| ||||||||||||||||||||||    
T  4002372 ttcacttaccttttccaaaaaacaaaaaccttcatattcagagcaacttcggttaaaaacttcttcagcaatagttgtcttgccaatac 4002460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3809940 - 3809992
Alignment:
Q  1 tcatcaagaacaataagaactttcatgcggccgatccatctctcaataccact 53  Q
    ||||||||||| |||||||| ||||||||||| ||||  ||||||||| ||||    
T  3809940 tcatcaagaacgataagaaccttcatgcggccaatccgcctctcaatatcact 3809992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 13398023 - 13398111
Alignment:
Q  138 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaatac 226  Q
    |||||| |||||| |||| |||||||| || ||||| || |||| | ||||  |||| |||||||| |||||||||||||| |||||||    
T  13398023 ttcactcacctttgccaaaaaacaacatccttcatattcagaacaaatttgattaaaaatttcttcggcaatagttgtctttccaatac 13398111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 1967 - 1938
Alignment:
Q  197 tttcttctgcaatagttgtcttgccaatac 226  Q
    ||||||||||||||||||||||||||||||    
T  1967 tttcttctgcaatagttgtcttgccaatac 1938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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