View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_high_10 (Length: 286)
Name: NF6386_high_10
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 7663725 - 7663445
Alignment:
| Q |
1 |
tctcgagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7663725 |
tctcgagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaa |
7663626 |
T |
|
| Q |
101 |
gaggtgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7663625 |
gaggtgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatcactgcccac |
7663526 |
T |
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| Q |
201 |
aactttgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccattctgtgctgct |
281 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7663525 |
aactttgtctaattcttcttggactttagctagaattcttgggtttcgaattaattctgcaatggcccattctgtggtgct |
7663445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 7620167 - 7620447
Alignment:
| Q |
1 |
tctcgagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7620167 |
tctcgagcgatggcccatacattgaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaa |
7620266 |
T |
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| Q |
101 |
gaggtgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccac |
200 |
Q |
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| T |
7620267 |
gaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatctcgacccac |
7620366 |
T |
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| Q |
201 |
aactttgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccattctgtgctgct |
281 |
Q |
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||| ||||| ||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7620367 |
aacattgtccaattcttgttgaacttgagctaagattcttgggtttcgaattaattctgcaatggcccattctgtggtgct |
7620447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 7669419 - 7669154
Alignment:
| Q |
4 |
cgagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagag |
103 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7669419 |
cgagcaatggcccatacattaaccaaaagagttgaactctttggaacgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaagag |
7669320 |
T |
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| Q |
104 |
gtgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaac |
203 |
Q |
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|||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
7669319 |
gtgttgatgggtgcaagcgaaatgtttcttttatcactgtttgtaggtaaggtaggttaggtatgtcatct--tttcacgttcctatctcggcccacaac |
7669222 |
T |
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| Q |
204 |
tttgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccatt |
271 |
Q |
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||||| ||||||| ||| |||| |||||| |||||||||||| || | || |||||||||||||| |
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| T |
7669221 |
attgtccaattcttgttgaacttgagctaagattcttgggtttttgatcatttttgcaatggcccatt |
7669154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 7682961 - 7682739
Alignment:
| Q |
4 |
cgagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagag |
103 |
Q |
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||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7682961 |
cgagctatggcccatacatttaccaaaagagttgaatcctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagag |
7682862 |
T |
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| Q |
104 |
gtgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaac |
203 |
Q |
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|||| |||||||||||||| || |||||||||| ||||||||| ||||||||||| | ||||| || ||||||||||||||||| || | || ||||| |
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| T |
7682861 |
gtgtagatggatgcaagcgaaatgtttcttttaccactgcttgaaggtaaggtagttgaggtaaatcctcttctttcacgttcctgtctcgaccaacaac |
7682762 |
T |
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| Q |
204 |
tttgtctaattcttcttggactt |
226 |
Q |
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| T |
7682761 |
ggtctctaattcttgttggactt |
7682739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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