View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_high_2 (Length: 438)
Name: NF6386_high_2
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 46939875 - 46939484
Alignment:
| Q |
18 |
aaggaggatatgtagaaggaagaaattcagtgtcttgcatagaagcatcatcatcaccagcaataaaaagaggaatcatagttgaagaaggaagaaaatc |
117 |
Q |
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| T |
46939875 |
aaggaggatatgtagaaggaagaaattcagtgtcttgcatagaagcatcatcatcaccagcaataaaaagaggaatcatagttgaagaaggaagaaaatc |
46939776 |
T |
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| Q |
118 |
agtgtcttatgttgatgaaacaaagttagcagcagaagaaaaggtaggtaaatttgttgaggcaagaaaatcagtgtcccatattgaaacattgtcttct |
217 |
Q |
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| T |
46939775 |
agtgtcttatgttgatgaaacaaagttagcagcagaagaaaaggtaggtaaatttgttgaggcaagaaaatcagtgtcccatattgaaacattgtcttct |
46939676 |
T |
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| Q |
218 |
gttattgaaaaacttcaagtgaaggttttggtctcagacatgccaagtttcatgcaagtgcatgcttttcgttgtgcaagaaggacatatgatagtcttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46939675 |
gttattgaaaaacttcaagtgaaggttttggtctcagacatgccaagtttcatgcaagtgcatgcttttcgttgtgcaagaaggacatatgatagtcttg |
46939576 |
T |
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| Q |
318 |
aggagtttagctccaaacacattgctcataacattaagaaggtatatgctaattatgctttaattttcacatctctatttatatattaatta |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46939575 |
aggagtttagctccaaacacattgctcataacattaagaaggtatatgctaattatgctttaattttcacatctctatttatatatttatta |
46939484 |
T |
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