View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_high_3 (Length: 436)
Name: NF6386_high_3
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 24 - 361
Target Start/End: Original strand, 17770656 - 17770993
Alignment:
| Q |
24 |
cgaagatactgacttaacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccctgaataatttt |
123 |
Q |
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| T |
17770656 |
cgaagatactgacttaacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtccattgtcaaaccctgaataatttt |
17770755 |
T |
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| Q |
124 |
ggtgataatatatagtttaaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtg |
223 |
Q |
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| T |
17770756 |
ggtgataatatatagtttgaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtg |
17770855 |
T |
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| Q |
224 |
aagagatttaagagagaagcaagtgaggaaaagtgatttatataacagaaagaaaggatgtggtaaaacagaaagttgaaacaattaatgataaatggtg |
323 |
Q |
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| T |
17770856 |
aagagatttaagagagaagcaagtgaggaaaagtgatttatataaaagaaagaaaggatgtggtaaaatagaaagttgaaacaaataatgataaatggtg |
17770955 |
T |
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| Q |
324 |
tctttttgagcttgtaaccttttgatttcggctgacag |
361 |
Q |
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| T |
17770956 |
tctttttgagcttgtaaccttttgatttcggctgacag |
17770993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 1575777 - 1575690
Alignment:
| Q |
25 |
gaagatactgacttaacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccct |
113 |
Q |
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| T |
1575777 |
gaagatactggcttaacttgattttcccatttgctctttgagaaggata-caaagctacctaagccaccaaagtcccctgccaaaccct |
1575690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 8331757 - 8331699
Alignment:
| Q |
30 |
tactgacttaacttaattttcccatataccctttgagaaggataccaaagctaccaaag |
88 |
Q |
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| T |
8331757 |
tactgatttaacttgatttacccatttgccctctgacaaggataccaaagctaccaaag |
8331699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 5391869 - 5391726
Alignment:
| Q |
128 |
ataatatatagtttaaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtgaaga |
227 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
5391869 |
ataacatatagtttgaatgttaacaatgtgatgtgaacaataaagaaaagttagagaagtgaaggcttaagaagagattggttgtgatagagggtgaatt |
5391770 |
T |
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| Q |
228 |
gatttaagagagaagcaagtgaggaaaagtgatttatataacagaaagaaag |
279 |
Q |
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| T |
5391769 |
gatttaagagaga--------aggaaaagtgatttatataaaagaaagaaag |
5391726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 5396175 - 5396075
Alignment:
| Q |
91 |
accaaagtcccttgtcaaaccctgaataattttggtgataatatatagtttaaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaa |
190 |
Q |
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| T |
5396175 |
accaaagtccccggccaaaccctgaataattatggtgataaaatatagtttgaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaa |
5396076 |
T |
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| Q |
191 |
g |
191 |
Q |
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| T |
5396075 |
g |
5396075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 5396224 - 5396169
Alignment:
| Q |
24 |
cgaagatactgacttaacttaattttcccatataccctttgagaaggataccaaag |
79 |
Q |
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| T |
5396224 |
cgaagatactgatttaacttgattttcccatttaccctttgagaaggataccaaag |
5396169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 41066752 - 41066821
Alignment:
| Q |
245 |
agtgaggaaaagtgatttatataacagaaagaaaggatgtggtaaaacagaaagttgaaacaattaatga |
314 |
Q |
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| T |
41066752 |
agtgaggaaaagtgatttatataaaagaaagaaaggatgttgtaaaacagaaagttgggacaattaatga |
41066821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 41066667 - 41066729
Alignment:
| Q |
180 |
agagaagtgaagggttaataaga---gattggttgtgatagagggtgaagagatttaagagag |
239 |
Q |
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| T |
41066667 |
agagaagtgaagggttattaagaagagattggctgtgatagagggtgaagagatttaagagag |
41066729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 15740599 - 15740686
Alignment:
| Q |
25 |
gaagatactgacttaacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccct |
113 |
Q |
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| T |
15740599 |
gaagatactggcttaacttgattttcccatttgctctttgagaaggata-caaagctacctaagccaccaaagtcccctgccaaaccct |
15740686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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