View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6386_high_7 (Length: 337)
Name: NF6386_high_7
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 47180778 - 47181085
Alignment:
| Q |
11 |
cacagacagcagtgagccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggattacttagccttggattcggctttgatcttcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47180778 |
cacagacagcagtgagccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggattacttagccttggattcggctttgatcttcg |
47180877 |
T |
|
| Q |
111 |
agagcgttgaacactatcatcactcttcttcttctgatcattctcaatctctaccacattcttctcctcaccgttactcgctgtcgtcgccgcagaagct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47180878 |
agagcgttgaacactatcatcactcttcttcttctgatcattctcaatctctaccacattcttctcctcaccgttactcgctgtcgtcgccgcagaagct |
47180977 |
T |
|
| Q |
211 |
tcatcaaccttaatcctgttagtttgggcacctgaacccttgtttgacgaggcttggcgaccaatcacacatcccatttcttgaaactatgcttcattgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47180978 |
tcatcaaccttaatcctgttagtttgggcacctgaacccttgtttgacgaggcttggcgaccaatcacacatcccatttcttgaaactatgcttcattgt |
47181077 |
T |
|
| Q |
311 |
cacttagc |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
47181078 |
cacttagc |
47181085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 49216107 - 49216162
Alignment:
| Q |
25 |
agccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggatt |
80 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| ||| ||| ||||||||||| |
|
|
| T |
49216107 |
agccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggatt |
49216162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 6700202 - 6700130
Alignment:
| Q |
25 |
agccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggattacttagccttggattcg |
97 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||| | | || |||||||||||||| | ||| ||||||| |
|
|
| T |
6700202 |
agccaagaaggccaaccagctgcaacctgttcaccatgaacattattaggtggattactcaacctcggattcg |
6700130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University