View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_low_1 (Length: 623)
Name: NF6386_low_1
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 276 - 618
Target Start/End: Complemental strand, 31863605 - 31863251
Alignment:
| Q |
276 |
gtacggtatattttgtgaaaagacaaaagaaagatgagatgagat----------caaaaataactagggagtgaggagaagggtgattaaacggagaag |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31863605 |
gtacggtatattttgtgaaaagacaaaagaaagatgagatgagatgagatgagatcaaaagtaactagggagtgaggagaagggtgattaaacggagaag |
31863506 |
T |
|
| Q |
366 |
attactaactcgtgagatccatctaaagtgaagatatgtgttcagaaacaaaattgaatcccttaaaataaataaataaattatagttttaatccatgaa |
465 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31863505 |
attactaactcgtgagatcaatctaaagtgaagatatgtgttcagaaaaaaaattgaatcccttaaaataaataaaaaaattatagttttaatccatgaa |
31863406 |
T |
|
| Q |
466 |
atatatatgttcgtatgtaaacaagaataaatacattgttctaccataaaggatccatgctaaggataaattaagaactgaatattagtatataat-nnn |
564 |
Q |
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| T |
31863405 |
atatatatgttcgtatgtaaacaagaataaatacattgttctaccataaaggattcatgctaaggataaattaagaactgaatattagtatataataaaa |
31863306 |
T |
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| Q |
565 |
nnnntgaatgtaaatc-aagttgtagatttatattgatgggatacctttgctact |
618 |
Q |
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| T |
31863305 |
aaaatgaatgtaaatcaaagctgtagatttatattgatgggatacctttggtact |
31863251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 276 - 618
Target Start/End: Complemental strand, 31897816 - 31897478
Alignment:
| Q |
276 |
gtacggtatattttgtgaaaagacaaaagaaagatgagatgagatcaaaaataactagg-gagtgaggagaagggtgattaaacggagaagattactaac |
374 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| | | || |||||||||||||||||||| |||||||||||||||| |
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| T |
31897816 |
gtacggtttattttgtgaaaagacaaaagaaagatgaggtgagatcaaaagtaaccaagagactgaggagaagggtgattaaatggagaagattactaac |
31897717 |
T |
|
| Q |
375 |
tcgtgagatccatctaaagtgaagatatgtgttcagaaacaaaattgaatcccttaaaataaataaataaattatagttttaatccatgaaatatatatg |
474 |
Q |
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|| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| | | |||| ||| || |||||||||||| ||||| |
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| T |
31897716 |
tcatgagatccatctaaagtgaagatatgtgcttagaaacaaaattgaatctcttaaaataaa-ataaaaatgataattgagatccatgaaatacatatg |
31897618 |
T |
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| Q |
475 |
ttcgtatgtaaacaagaataaatacattgttctaccataaaggatccatgctaaggataaattaagaactgaatattagtatataatnnnnnnntgaatg |
574 |
Q |
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| T |
31897617 |
tttgtatgtaaacaagaataaatacattgttctaccacaaaggatccatgctaaggataatttaagaattggatataagtatataat----aaatgaatg |
31897522 |
T |
|
| Q |
575 |
taaatcaagttgtagatttatattgatgggatacctttgctact |
618 |
Q |
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| T |
31897521 |
taaatcaagttgcagatttatatcgaatgtatacctttggtact |
31897478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 335 - 618
Target Start/End: Complemental strand, 31929717 - 31929436
Alignment:
| Q |
335 |
gagtgaggagaagggtgattaaacggagaagattactaactcgtgagatccatctaaagtgaagatatgtgttcagaaacaaaattgaatcccttaaaat |
434 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
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| T |
31929717 |
gagtgaggagaagggtgattaaatggagaagattaataactcgtgagatccatctaacgtgaaaatatgtgcctagaaacaaaattgaatctcttaaatt |
31929618 |
T |
|
| Q |
435 |
aaat-aaataaattatagttttaatccatgaaatatatatgttcgtatgtaaacaagaat-aaatacattgttctaccataaaggatccatgctaaggat |
532 |
Q |
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|||| ||| |||||||| ||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31929617 |
aaataaaaaaaattataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaaggatccatgctaaggat |
31929518 |
T |
|
| Q |
533 |
aaattaagaactgaatattagtatataatnnnnnnntgaatgtaaatcaagttgtagatttatattgatgggatacctttgctact |
618 |
Q |
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|||||||||| || |||| ||||||||| ||||||||||| |||||| ||||||||||||| || ||||||||| |||| |
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| T |
31929517 |
aaattaagaattgcatatatgtatataat----aaatgaatgtaaattaagttgcagatttatattgaaggtatacctttggtact |
31929436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 31863793 - 31863665
Alignment:
| Q |
88 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
187 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31863793 |
acttaataactttaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
31863694 |
T |
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| Q |
188 |
cacaatttagataaacacaagaaacttct |
216 |
Q |
| |
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||||||||||||| ||||||||||||||| |
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| T |
31863693 |
cacaatttagatatacacaagaaacttct |
31863665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 31929951 - 31929830
Alignment:
| Q |
88 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
187 |
Q |
| |
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||||||||| ||||| ||||||||||| ||| |||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
31929951 |
acttaataaattaaatttgtagagtatcatcattatcttatagatccaacctacttcatatggcgtttttttacaatcaccacattcttcacatgtgttc |
31929852 |
T |
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| Q |
188 |
cacaatttagataaacacaaga |
209 |
Q |
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||||||||||||| |||||||| |
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| T |
31929851 |
cacaatttagatatacacaaga |
31929830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 31898007 - 31897879
Alignment:
| Q |
88 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
187 |
Q |
| |
|
||||||||| |||||||||||||| | ||| |||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
31898007 |
acttaataaattaaacttgtagagagtcatcattatcttatagatccaacctacttcatacggcgttcttttacaatcaccacattcttcacatgtgttc |
31897908 |
T |
|
| Q |
188 |
cacaatttagataaacacaagaaacttct |
216 |
Q |
| |
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||||||||||||| ||| ||||||||||| |
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| T |
31897907 |
cacaatttagatatacataagaaacttct |
31897879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 441
Target Start/End: Complemental strand, 31842200 - 31842119
Alignment:
| Q |
360 |
gagaagattactaactcgtgagatccatctaaagtgaagatatgtgttcagaaacaaaattgaatcccttaaaataaataaa |
441 |
Q |
| |
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|||| ||||| |||| ||||| |||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |
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| T |
31842200 |
gagaggattattaacgcgtgacatccatctaaagtgaagatatgtgctaagaaacgaaattgaatctcttaaaataaataaa |
31842119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 31845974 - 31846031
Alignment:
| Q |
380 |
agatccatctaaagtgaagatatgtgttcagaaacaaaattgaatcccttaaaataaataa |
440 |
Q |
| |
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||||| |||||||||||||||||||| || ||| ||||||||||| |||||||||||||| |
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|
| T |
31845974 |
agatcgatctaaagtgaagatatgtg--ca-aaaaaaaattgaatcacttaaaataaataa |
31846031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 31929767 - 31929730
Alignment:
| Q |
276 |
gtacggtatattttgtgaaaagacaaaagaaagatgag |
313 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||| |
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| T |
31929767 |
gtacggtttattttgtgaaaagacaaaagaaaaatgag |
31929730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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