View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_low_10 (Length: 319)
Name: NF6386_low_10
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 4975164 - 4975456
Alignment:
| Q |
8 |
gagcagagacctgatggttaaataaaatttgttgtttaaaaaagaaatcaatatagtaatatttcttgagtaatactaagttactaacaaaaaataatct |
107 |
Q |
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| T |
4975164 |
gagcagagacctgatggttaaataaaatttgttgtttaaaaaa-aaatcaatatagtaatatttcttgagtaatactaagttactaacaaaaaataatct |
4975262 |
T |
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| Q |
108 |
cacaattgaaaactatgcattattgaagaaaatgctaaaaggaagagagaataaccgaagggttgaaagagtagattatgggtttaatgatttatcaact |
207 |
Q |
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| T |
4975263 |
cacaattgaaaactatgcattattgaagaaaatactaaaaggaagagagaataaccgaagggttgaaagagtagattatgggtttaatgatttatcaact |
4975362 |
T |
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| Q |
208 |
gcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgaggaggtagagtaagatc |
301 |
Q |
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| T |
4975363 |
gcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgaggaggtagagtaagatc |
4975456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 4993072 - 4993364
Alignment:
| Q |
8 |
gagcagagacctgatggttaaataaaatttgttgtttaaaaaagaaatcaatatagtaatatttcttgagtaatactaagttactaacaaaaaataatct |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993072 |
gagcagagacctgatggttaaataaaatttgttgtttaaaaaa-aaatcaatatagtaatatttcttgagtaatactaagttactaacaaaaaataatct |
4993170 |
T |
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| Q |
108 |
cacaattgaaaactatgcattattgaagaaaatgctaaaaggaagagagaataaccgaagggttgaaagagtagattatgggtttaatgatttatcaact |
207 |
Q |
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| T |
4993171 |
cacaattgaaaactatgcattattgaagaaaatactaaaaggaagagagaataaccgaagggttgaaagagtagattatgggtttaatgatttatcaact |
4993270 |
T |
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| Q |
208 |
gcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgaggaggtagagtaagatc |
301 |
Q |
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| T |
4993271 |
gcttgcttaatattttatttaaggaagttatatcaaacatttattcataagttagaagacatctattctgatgctgaggaggtagagtaagatc |
4993364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 43312317 - 43312275
Alignment:
| Q |
8 |
gagcagagacctgatggttaaataaaatttgttgtttaaaaaa |
50 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
43312317 |
gagcagagaccaggtggttaaataaaatttgttgtttaaaaaa |
43312275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 10248220 - 10248185
Alignment:
| Q |
15 |
gacctgatggttaaataaaatttgttgtttaaaaaa |
50 |
Q |
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| T |
10248220 |
gacctgatggttaaataaaatttgttgtttcaaaaa |
10248185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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