View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6386_low_13 (Length: 277)

Name: NF6386_low_13
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6386_low_13
NF6386_low_13
[»] chr4 (28 HSPs)
chr4 (107-229)||(48864877-48864999)
chr4 (30-223)||(45371122-45371326)
chr4 (155-258)||(48734453-48734556)
chr4 (113-228)||(48871500-48871616)
chr4 (113-228)||(48876804-48876920)
chr4 (62-207)||(48146910-48147066)
chr4 (22-100)||(48853459-48853537)
chr4 (44-203)||(48155562-48155730)
chr4 (113-228)||(48887186-48887302)
chr4 (159-211)||(48160479-48160531)
chr4 (153-256)||(49043325-49043427)
chr4 (114-211)||(47208773-47208870)
chr4 (44-180)||(48170187-48170334)
chr4 (36-100)||(7772965-7773029)
chr4 (15-91)||(48734630-48734706)
chr4 (15-106)||(48899526-48899618)
chr4 (32-109)||(49040378-49040455)
chr4 (125-201)||(43595969-43596045)
chr4 (16-96)||(48871388-48871468)
chr4 (16-96)||(48876692-48876772)
chr4 (34-108)||(45365269-45365343)
chr4 (18-96)||(48887076-48887154)
chr4 (33-98)||(7787475-7787540)
chr4 (19-100)||(48889457-48889538)
chr4 (31-91)||(37826188-37826248)
chr4 (16-108)||(45384080-45384171)
chr4 (62-102)||(47208710-47208750)
chr4 (27-79)||(49058046-49058097)
[»] chr5 (4 HSPs)
chr5 (122-218)||(29697149-29697246)
chr5 (19-218)||(29688921-29689130)
chr5 (160-218)||(29711593-29711651)
chr5 (153-219)||(9120673-9120740)
[»] chr6 (2 HSPs)
chr6 (165-257)||(21017301-21017393)
chr6 (153-211)||(14197230-14197288)
[»] chr1 (4 HSPs)
chr1 (34-93)||(24381868-24381927)
chr1 (156-213)||(24368006-24368064)
chr1 (62-100)||(24341224-24341262)
chr1 (62-100)||(24353589-24353627)
[»] chr8 (2 HSPs)
chr8 (139-228)||(15349806-15349896)
chr8 (16-87)||(4029986-4030057)
[»] chr3 (1 HSPs)
chr3 (178-227)||(11004985-11005034)
[»] chr2 (1 HSPs)
chr2 (16-53)||(29351214-29351251)
[»] chr7 (1 HSPs)
chr7 (31-99)||(48884652-48884720)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 48864877 - 48864999
Alignment:
Q  107 ttatgtatgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatc 206  Q
    ||||| ||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||    
T  48864877 ttatgcatgtgtaactggattgggttctaatgtatgttctgtttgctgcttgaaattgttttatattgtaatttatttgctgaatgtttgcatgttgatc 48864976  T
Q  207 aagatcaaaatcacaattacact 229  Q
    |||||||||||||||||||||||    
T  48864977 aagatcaaaatcacaattacact 48864999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 45371326 - 45371122
Alignment:
Q  30 taatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt-----------atgtatgtgc 118  Q
    |||||||||||||||||||||||| | |||||||||||||||| || |||||||  ||||||||| ||||| |||||||           ||| |||||     
T  45371326 taatatgtcatgaaatgtttattgattaattgtttgtaatatgcttcttggaaactttgacaactctgtttgtgtgattcacttttatttatgcatgtgt 45371227  T
Q  119 aactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatc 218  Q
    |  ||||||| ||||||||||||||| || ||  || | |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |||    
T  45371226 agttggattgagttctaatgtatgttgtgatcactgttagaaattgttttataatgtaatttattttatgaatttatgcatgttgatcaagatcaagatc 45371127  T
Q  219 acaat 223  Q
    |||||    
T  45371126 acaat 45371122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 48734556 - 48734453
Alignment:
Q  155 cttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattacacttctcttatttaaagcacttcattag 254  Q
    |||||| ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||     
T  48734556 cttgaatttgttttataccgtaatttatttgatgaatttatgcatgttgatcaagatcaaaatcaccattacactactcttattcaaagcacttcattat 48734457  T
Q  255 aaat 258  Q
    ||||    
T  48734456 aaat 48734453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 48871500 - 48871616
Alignment:
Q  113 atgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttag-ttgatgaatttatgcatgttgatcaagat 211  Q
    ||||| || ||||||| | ||||||||||||| |||||  ||||||||||||||||| || |||| |||| ||||| ||||| |||||||| | ||||||    
T  48871500 atgtgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgttttacatggtaaattagtttgataaatttttgcatgttaaacaagat 48871599  T
Q  212 caaaatcacaattacac 228  Q
    |||||||||||||||||    
T  48871600 caaaatcacaattacac 48871616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 48876804 - 48876920
Alignment:
Q  113 atgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttag-ttgatgaatttatgcatgttgatcaagat 211  Q
    ||||| || ||||||| | ||||||||||||| |||||  ||||||||||||||||| || |||| |||| ||||| ||||| |||||||| | ||||||    
T  48876804 atgtgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgttttacatggtaaattagtttgataaatttttgcatgttaaacaagat 48876903  T
Q  212 caaaatcacaattacac 228  Q
    |||||||||||||||||    
T  48876904 caaaatcacaattacac 48876920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 48147066 - 48146910
Alignment:
Q  62 tttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt-----------atgtatgtgcaactggattgggttctaatgtatgttctggtc 150  Q
    |||||| ||||||| ||||||||||||||||||||||||  ||||||           ||| ||||| |||||||||| ||||||||||||||| |||||    
T  48147066 tttgtagtatgtttcttggaaatgttgacaactttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttctaatgtatgttgtggtc 48146967  T
Q  151 gttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatca 207  Q
      ||| |||||||||| |||||||||||||| || |||| ||| | |||||||||||    
T  48146966 actgcctgaaattgttctatattgtaatttattttatgagtttctacatgttgatca 48146910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 48853459 - 48853537
Alignment:
Q  22 agctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgttt 100  Q
    |||| ||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||| ||||||||||||    
T  48853459 agctgatgtaatatgtcatgaaatgtttgttggtcaattatctgtgatatgttaattggaaatgtttacaactttgttt 48853537  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 48155730 - 48155562
Alignment:
Q  44 atgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt-----------atgtatgtgcaactggattgggtt 132  Q
    ||||||||||||||| | |||||| ||||||| ||||  ||||||||| |||||||| |||||||           ||  |||||  ||||||||| |||    
T  48155730 atgtttattggtcaactatttgtagtatgtttgttgggcatgttgacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagtt 48155631  T
Q  133 ctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttg 203  Q
    |||||||||||| ||||| ||||||||||||||||||| || ||||||| ||  ||| |||||||||||||    
T  48155630 ctaatgtatgttgtggtcattgcttgaaattgttttattttttaatttattt--tgagtttatgcatgttg 48155562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 48887186 - 48887302
Alignment:
Q  113 atgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagtt-gatgaatttatgcatgttgatcaagat 211  Q
    ||||| || ||||||| | ||||||| ||||| |||||  ||||||||||||||||  || |||| |||||| |||||||||  ||||||| | ||||||    
T  48887186 atgtgtaattggattgagctctaatgcatgttttggtcactgcttgaaattgtttttcatggtaaattagtttgatgaattttagcatgttaaacaagat 48887285  T
Q  212 caaaatcacaattacac 228  Q
    |||||||||||||||||    
T  48887286 caaaatcacaattacac 48887302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 48160531 - 48160479
Alignment:
Q  159 aaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagat 211  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  48160531 aaattgttttatattgtaattaatttgatgagtttatgcatgttgatcaagat 48160479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 49043427 - 49043325
Alignment:
Q  153 tgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattacacttctcttatttaaagcacttcatt 252  Q
    |||||| ||||||| || ||||||||||| ||||||| ||||||||||||  | ||||||||||| |||| |||||  || | ||| |||||||||||||    
T  49043427 tgcttgtaattgttataaattgtaatttatttgatgagtttatgcatgttactaaagatcaaaattacaaatacac-actttgattcaaagcacttcatt 49043329  T
Q  253 agaa 256  Q
    ||||    
T  49043328 agaa 49043325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 47208773 - 47208870
Alignment:
Q  114 tgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagat 211  Q
    |||| |||||||||| || || |||||| || |||||  |  ||||||||||| ||||||| |||||| |||||||||||||||  ||||||||||||    
T  47208773 tgtgtaactggattgagtgctgatgtatattgtggtcactagttgaaattgttctatattgaaatttatttgatgaatttatgcgcgttgatcaagat 47208870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 48170334 - 48170187
Alignment:
Q  44 atgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtga-----------ttatgtatgtgcaactggattgggtt 132  Q
    ||||||||||||||| | |||||| ||||||| || |||| ||||| | |||||||| |||||           ||||| ||||| |||||||||| ||     
T  48170334 atgtttattggtcaactatttgtagtatgtttgtttgaaaggttgatagctttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtg 48170235  T
Q  133 ctaatgtatgttctggtcgttgcttgaaattgttttatattgtaattt 180  Q
    |||||||||||| |||||  |||| |||||||| ||||||||||||||    
T  48170234 ctaatgtatgttgtggtcactgctagaaattgtattatattgtaattt 48170187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 7773029 - 7772965
Alignment:
Q  36 gtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgttt 100  Q
    |||||| ||||||||||||| |||| ||||| ||| | ||||||||||| |||||||||||||||    
T  7773029 gtcatggaatgtttattggttaattatttgtcataggcttattggaaatattgacaactttgttt 7772965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 48734706 - 48734630
Alignment:
Q  15 tcacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgaca 91  Q
    ||||||||||||||| |||| | ||||||||||||||| |||||   |||||||||||||||| | || ||||||||    
T  48734706 tcacatgagctaatgcaataggccatgaaatgtttattagtcaaacatttgtaatatgtttatcgaaattgttgaca 48734630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 48899526 - 48899618
Alignment:
Q  15 tcacatgagctaatgtaatatgtcatgaaatgtttattg-gtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtga 106  Q
    ||||||||||| ||  |||||||||||||||||||||||  ||| |  |||| |||||| ||||||||||| |||||| |||||||| |||||    
T  48899526 tcacatgagctgatccaatatgtcatgaaatgtttattgtttcactattttgcaatatgcttattggaaatattgacagctttgtttgtgtga 48899618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 49040455 - 49040378
Alignment:
Q  32 atatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatta 109  Q
    ||||||||  |||||| ||||||| || | | ||||||||| ||||||| ||| ||||||||||||||| ||||||||    
T  49040455 atatgtcacaaaatgtatattggttaactatctgtaatatgcttattggtaatattgacaactttgtttgtgtgatta 49040378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 43596045 - 43595969
Alignment:
Q  125 attgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgt 201  Q
    |||| ||| ||||||||||| |||||  |||| ||||||||||||| |||||||||| || | || |||||||||||    
T  43596045 attgagttttaatgtatgttgtggtcaatgctcgaaattgttttattttgtaatttattttacgagtttatgcatgt 43595969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 48871388 - 48871468
Alignment:
Q  16 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaacttt 96  Q
    |||||| ||| || |||||||| ||||| ||||||||| | |  | ||| |||||||||||||| ||||||||||||||||    
T  48871388 cacatgtgcttatttaatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaacttt 48871468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 48876692 - 48876772
Alignment:
Q  16 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaacttt 96  Q
    |||||| ||| || |||||||| ||||| ||||||||| | |  | ||| |||||||||||||| ||||||||||||||||    
T  48876692 cacatgtgcttatttaatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaacttt 48876772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 45365343 - 45365269
Alignment:
Q  34 atgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt 108  Q
    |||||||| ||||||||||||| ||   ||||||||||| ||||||||||  |||| | |||||||| |||||||    
T  45365343 atgtcatgcaatgtttattggttaacaatttgtaatatgcttattggaaacattgatatctttgtttgtgtgatt 45365269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 48887076 - 48887154
Alignment:
Q  18 catgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaacttt 96  Q
    |||||||| || |||||||| ||||| |||| |||| | |  ||||| | |||||||||||| ||||||||||||||||    
T  48887076 catgagcttatttaatatgttatgaactgttaattgcttagctgtttattatatgtttattgaaaatgttgacaacttt 48887154  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 7787475 - 7787540
Alignment:
Q  33 tatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgt 98  Q
    |||||||||||||||||||| ||  | ||||||| ||||| |||| | |||| |||||||||||||    
T  7787475 tatgtcatgaaatgtttattcgtttactgtttgtcatatgcttatcgaaaatattgacaactttgt 7787540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 48889457 - 48889538
Alignment:
Q  19 atgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgttt 100  Q
    ||||||| ||||||||||||||||||| |||| | || || | |||||| | |||| |||| |||| |||||| ||||||||    
T  48889457 atgagctgatgtaatatgtcatgaaatatttagttgttaactctttgtagtttgttaattgaaaatattgacagctttgttt 48889538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 37826248 - 37826188
Alignment:
Q  31 aatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgaca 91  Q
    ||||| ||||||||||||||||||| || |||||| |||||| |||||  |||| ||||||    
T  37826248 aatatttcatgaaatgtttattggttaactgtttggaatatgcttattacaaatattgaca 37826188  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 45384171 - 45384080
Alignment:
Q  16 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt 108  Q
    |||||||||| ||  || |||||||| ||||| ||||||| ||   ||||||||||| ||||| ||||| ||||||||| ||||| |||||||    
T  45384171 cacatgagctgatcgaacatgtcatgcaatgtctattggttaacaatttgtaatatgcttatt-gaaatattgacaactctgtttgtgtgatt 45384080  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 47208710 - 47208750
Alignment:
Q  62 tttgtaatatgtttattggaaatgttgacaactttgttttt 102  Q
    |||||| ||||||| ||||||||||||||||||| ||||||    
T  47208710 tttgtagtatgtttgttggaaatgttgacaacttggttttt 47208750  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 49058097 - 49058046
Alignment:
Q  27 atgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattg 79  Q
    ||||||||||||||||| ||||||||||||||    |||||||||||||||||    
T  49058097 atgtaatatgtcatgaa-tgtttattggtcaaacacttgtaatatgtttattg 49058046  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 29697149 - 29697246
Alignment:
Q  122 tggattgggttctaatgtatgt-tctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatc 218  Q
    |||||||  ||||||||||||| | ||||||||| ||||||||| |||||||||||||| | || ||||  ||||||||||||||||| |||||||||    
T  29697149 tggattgtattctaatgtatgtctgtggtcgttggttgaaattggtttatattgtaattgattttatgatcttatgcatgttgatcaatatcaaaatc 29697246  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 29688921 - 29689130
Alignment:
Q  19 atgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgat---------ta 109  Q
    ||||||| ||| ||||||||||||||||||||||||||||   |||||| | ||||||||| ||||||||||  |||||||| | ||||         |     
T  29688921 atgagctgatgaaatatgtcatgaaatgtttattggtcaaacatttgtattgtgtttattgaaaatgttgactgctttgtttctatgatgcaatgttgtt 29689020  T
Q  110 tgtatgtgcaactggattgggttctaatgtatgttc-tggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaa 208  Q
    |||  ||| |  ||||||| ||||||||| |||||  ||||| ||  ||||||||| |||||||||||||| | || ||||  ||||| |||||||||||    
T  29689021 tgtgcgtgtatatggattgcgttctaatgcatgtttgtggtcattatttgaaattggtttatattgtaattgattttatgatcttatgaatgttgatcaa 29689120  T
Q  209 gatcaaaatc 218  Q
     |||||||||    
T  29689121 tatcaaaatc 29689130  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 29711651 - 29711593
Alignment:
Q  160 aattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatc 218  Q
    |||||||||||||| | ||| | ||||||| ||||||||||||||||||||||||||||    
T  29711651 aattgttttatattttcattgatttgatgagtttatgcatgttgatcaagatcaaaatc 29711593  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 9120673 - 9120740
Alignment:
Q  153 tgcttgaaattgttttatattgtaatttagt-tgatgaatttatgcatgttgatcaagatcaaaatca 219  Q
    |||||||||||||||||| | |||| ||||| | |||| |||||||||||  ||||||||||||||||    
T  9120673 tgcttgaaattgttttatttggtaaattagtctcatgagtttatgcatgtcaatcaagatcaaaatca 9120740  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 21017301 - 21017393
Alignment:
Q  165 ttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattacacttctcttatttaaagcacttcattagaaa 257  Q
    ||||||||||||||||| ||||||| ||||||||||||  | |||||||||||||||| |||||  ||||  || |||  |||||||||||||    
T  21017301 ttttatattgtaatttatttgatgagtttatgcatgttactaaagatcaaaatcacaaatacacgactctagttcaaattacttcattagaaa 21017393  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 14197288 - 14197230
Alignment:
Q  153 tgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagat 211  Q
    ||||| ||||||||||||||||||||| | ||||||| |||||||||||| ||||||||    
T  14197288 tgcttaaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagat 14197230  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 24381868 - 24381927
Alignment:
Q  34 atgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaac 93  Q
    |||||||||||||||||||||| || | ||||||| ||||||||||||||| ||||||||    
T  24381868 atgtcatgaaatgtttattggttaactatttgtaacatgtttattggaaatattgacaac 24381927  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 24368006 - 24368064
Alignment:
Q  156 ttgaaattgttttatattgtaatttagtt-gatgaatttatgcatgttgatcaagatca 213  Q
    ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||||||||    
T  24368006 ttgaaattgttttatatggtaaattagtttgatgagtttatccatgttgatcaagatca 24368064  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 24341224 - 24341262
Alignment:
Q  62 tttgtaatatgtttattggaaatgttgacaactttgttt 100  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  24341224 tttgtaatatgtttattggaaatattaacaactttgttt 24341262  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 24353589 - 24353627
Alignment:
Q  62 tttgtaatatgtttattggaaatgttgacaactttgttt 100  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  24353589 tttgtaatatgtttattggaaatattaacaactttgttt 24353627  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 15349806 - 15349896
Alignment:
Q  139 tatgttctggtcgttgcttgaaattgttttatattgtaatttagtt-gatgaatttatgcatgttgatcaagatcaaaatcacaattacac 228  Q
    |||||| |||||| || ||||||| ||||||||| |||| |||||| ||||| ||| ||||| || | |||||||||||||||||||||||    
T  15349806 tatgttttggtcgctgtttgaaatcgttttatatggtaaattagtttgatgagtttttgcatattaaacaagatcaaaatcacaattacac 15349896  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 4030057 - 4029986
Alignment:
Q  16 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgtt 87  Q
    ||||| ||||||| |||||| |||||||||| |||||| | |||  |||| ||||||||||||| |||||||    
T  4030057 cacattagctaatttaatatttcatgaaatggttattgattaatcatttggaatatgtttattgaaaatgtt 4029986  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 11005034 - 11004985
Alignment:
Q  178 tttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattaca 227  Q
    |||| ||||||| ||| ||||||||||||||||||||||||| |||||||    
T  11005034 tttatttgatgagtttttgcatgttgatcaagatcaaaatcataattaca 11004985  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29351214 - 29351251
Alignment:
Q  16 cacatgagctaatgtaatatgtcatgaaatgtttattg 53  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  29351214 cacatgagctaatgtaatatgtcatgaaatgattattg 29351251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 48884652 - 48884720
Alignment:
Q  31 aatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtt 99  Q
    |||||| ||||||||||||| |||| |||| ||| |||| || ||||||||||| |||||| |||||||    
T  48884652 aatatgacatgaaatgtttagtggttaattatttttaatttggttattggaaatattgacagctttgtt 48884720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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