View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6386_low_15 (Length: 246)
Name: NF6386_low_15
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 2861616 - 2861403
Alignment:
| Q |
16 |
tgaacaccgcgaacaaccggaagaggaaggtaacgataaagaaatgacattaaaccggttgtaccgagcacgagaaggacagcagctacacataaaccag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2861616 |
tgaacaccgcgaacaaccggaagaggaaggtaacgataaagaaatgacattaaaccggttgtaccgagcacgagaaggacagcagctacacataaaccag |
2861517 |
T |
|
| Q |
116 |
ctgcagatatttgaggaatggtgagaggtggtgattctgagatggcaactgctgcaatggatttcataggctggactggcataggcagaccgaagaagag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2861516 |
ctgcagatatttgaggaatggtgagaggtggtgattctgagatggcaactgctgcaatggatttcataggctggactggcataggcagaccgaagaagag |
2861417 |
T |
|
| Q |
216 |
gccggtggtgatgt |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2861416 |
gccggtggtgatgt |
2861403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University