View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_low_17 (Length: 235)
Name: NF6386_low_17
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 27608654 - 27608868
Alignment:
| Q |
6 |
gcatgtccaagaatatctattagtgcactcataaacatctgcatggtgattcaataacttctgtaagcaatcaatggtagagaaaggacagaacaaaaca |
105 |
Q |
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| T |
27608654 |
gcatgtccagcaacatctattagtgcactcataaacatctgcatggtgattcaataacttctgtaagcaatcaatggtagagaaaggacagaacaataca |
27608753 |
T |
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| Q |
106 |
tgcaagaatcgattcaagaaaccaccatacaaataaaggcagatttttttnnnnnnnnnnnnnncatgaagatgtaaataatctataatcacccaaaaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
27608754 |
tgcaagaatcgattcaagaaaccaccatacaaataaaggcagatttttttaaaaacaaaaaaaacatgaagatgtaaataatatataatcacccaaaaat |
27608853 |
T |
|
| Q |
206 |
tcaaagacataatac |
220 |
Q |
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||||||||||||||| |
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| T |
27608854 |
tcaaagacataatac |
27608868 |
T |
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