View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6386_low_19 (Length: 227)

Name: NF6386_low_19
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6386_low_19
NF6386_low_19
[»] chr6 (5 HSPs)
chr6 (1-220)||(6364516-6364737)
chr6 (76-122)||(20669681-20669727)
chr6 (83-121)||(34063139-34063177)
chr6 (78-119)||(882726-882767)
chr6 (83-124)||(1485145-1485186)
[»] scaffold0361 (1 HSPs)
scaffold0361 (83-124)||(14113-14154)
[»] chr4 (3 HSPs)
chr4 (83-124)||(32100337-32100378)
chr4 (82-149)||(25952454-25952519)
chr4 (83-125)||(4243432-4243474)
[»] chr1 (5 HSPs)
chr1 (83-124)||(1233350-1233391)
chr1 (78-118)||(32088580-32088620)
chr1 (83-119)||(7790646-7790682)
chr1 (83-119)||(8382011-8382047)
chr1 (83-119)||(20720861-20720897)
[»] chr5 (3 HSPs)
chr5 (83-119)||(7925431-7925467)
chr5 (83-124)||(10898766-10898807)
chr5 (83-119)||(37886042-37886078)
[»] chr3 (4 HSPs)
chr3 (76-141)||(341320-341387)
chr3 (83-122)||(190871-190910)
chr3 (83-135)||(35058406-35058459)
chr3 (83-124)||(46853533-46853574)
[»] chr8 (2 HSPs)
chr8 (84-122)||(37158679-37158717)
chr8 (89-122)||(32837455-32837488)
[»] chr7 (3 HSPs)
chr7 (77-115)||(18349814-18349852)
chr7 (83-124)||(38123665-38123706)
chr7 (83-119)||(33788829-33788865)
[»] chr2 (7 HSPs)
chr2 (78-112)||(13482059-13482093)
chr2 (78-124)||(44439294-44439340)
chr2 (87-124)||(13238849-13238886)
chr2 (78-119)||(13475915-13475956)
chr2 (83-119)||(16013714-16013750)
chr2 (83-119)||(37420199-37420235)
chr2 (83-119)||(44147955-44147991)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6364737 - 6364516
Alignment:
Q  1 caatgtattcatacgtaaatcattttaccttcaactcattttagccactcaaatttaatttttgtcaccgtgtaaccaaaagtgatttttacaatcaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6364737 caatgtattcatacgtaaatcattttaccttcaactcattttagccactcaaatttaatttttgtcaccgtataaccaaaagtgatttttacaatcaaat 6364638  T
Q  101 ttattgttcaactcactttcacatccaaacataaatcattttaccat-aattcacttttaactatcgattttcaaaatcaatt-aatcacatattgattt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6364637 ttattgttcaactcactttcacatccaaacataaatcattttaccttaaattcacttttaactatcgattttcaaaatcaattcaatcacatattgattt 6364538  T
Q  199 ttgccacatctgttttcatttc 220  Q
    ||||||||||||||||||||||    
T  6364537 ttgccacatctgttttcatttc 6364516  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 20669727 - 20669681
Alignment:
Q  76 ccaaaagtgatttttacaatcaaatttattgttcaactcactttcac 122  Q
    ||||| |||||||||||| |||||||||  |||||||||||||||||    
T  20669727 ccaaatgtgatttttacattcaaatttacggttcaactcactttcac 20669681  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 34063139 - 34063177
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttca 121  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  34063139 tgatttttacattcaaatttattgttcaactcacattca 34063177  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 882726 - 882767
Alignment:
Q  78 aaaagtgatttttacaatcaaatttattgttcaactcacttt 119  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  882726 aaaattgatttttacattcaaatttattgtttaactcacttt 882767  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 1485186 - 1485145
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||    
T  1485186 tgattttaacactcaaatttattgttcaactcacttttacat 1485145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 14154 - 14113
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  14154 tgatttttacactcaaatttatttttcaactcactttcacat 14113  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 32100337 - 32100378
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  32100337 tgatttttacactcaaatttattgttcaactcacttttacat 32100378  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 25952454 - 25952519
Alignment:
Q  82 gtgatttttacaatcaaatttattgttcaactcactttcacatccaaacataaatcattttaccataa 149  Q
    |||||||||| | |||||||||||||||| ||||||||||| |  ||| |||||| ||||||||||||    
T  25952454 gtgatttttagactcaaatttattgttcacctcactttcacgt--aaaaataaattattttaccataa 25952519  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 4243432 - 4243474
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacatc 125  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||    
T  4243432 tgatttttacactcaaatttattgttctactcacttttacatc 4243474  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 1233350 - 1233391
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  1233350 tgatttttacactcaaatttattgttgaactcactttcacat 1233391  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 32088620 - 32088580
Alignment:
Q  78 aaaagtgatttttacaatcaaatttattgttcaactcactt 118  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  32088620 aaaagtgatttttacactgaaatttattgttcaactcactt 32088580  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 7790682 - 7790646
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    |||||||||||  ||||||||||||||||||||||||    
T  7790682 tgatttttacacacaaatttattgttcaactcacttt 7790646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 8382011 - 8382047
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  8382011 tgatttttacattcaagtttattgttcaactcacttt 8382047  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 20720861 - 20720897
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||||||||||||||  |||||||||||||    
T  20720861 tgatttttacaatcaaatttatccttcaactcacttt 20720897  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 7925431 - 7925467
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7925431 tgatttttacactcaaatttattgttcaactcacttt 7925467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 10898766 - 10898807
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    |||||||||||  |||||||||||||||||||||||| ||||    
T  10898766 tgatttttacacacaaatttattgttcaactcacttttacat 10898807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 37886078 - 37886042
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||| | |||||||||||||||||||||||    
T  37886078 tgatttttacattgaaatttattgttcaactcacttt 37886042  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 341320 - 341387
Alignment:
Q  76 ccaaaagtgatttttacaatcaaatttattgttcaactcactttcac--atccaaacataaatcattt 141  Q
    ||||| |||||||||||| ||||||||||| ||||| ||||||| ||  |||||| ||||||||||||    
T  341320 ccaaatgtgatttttacactcaaatttatttttcaattcacttttacgtatccaatcataaatcattt 341387  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 190871 - 190910
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcac 122  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  190871 tgatttttgcactcaaatttattgttcaactcactttcac 190910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 35058406 - 35058459
Alignment:
Q  83 tgatttttacaatcaaat-ttattgttcaactcactttcacatccaaacataaa 135  Q
    ||||||| ||| |||||| ||||||||||||||||||| | |||||||||||||    
T  35058406 tgattttaacactcaaatattattgttcaactcacttttatatccaaacataaa 35058459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 46853574 - 46853533
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||    
T  46853574 tgattttaacactcaaatttattgttcaactcacttttacat 46853533  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 37158717 - 37158679
Alignment:
Q  84 gatttttacaatcaaatttattgttcaactcactttcac 122  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  37158717 gatttttacactcaaatttattgttcaactcaccttcac 37158679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 32837455 - 32837488
Alignment:
Q  89 ttacaatcaaatttattgttcaactcactttcac 122  Q
    ||||| ||||||||||||||||||||||||||||    
T  32837455 ttacattcaaatttattgttcaactcactttcac 32837488  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 18349814 - 18349852
Alignment:
Q  77 caaaagtgatttttacaatcaaatttattgttcaactca 115  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  18349814 caaacgtgatttttacactcaaatttattgttcaactca 18349852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 38123706 - 38123665
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  38123706 tgatttttacactcaaatttattggtcaactcacttttacat 38123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 33788829 - 33788865
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  33788829 tgatttttacaatcaaatttattattcaactcccttt 33788865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 13482059 - 13482093
Alignment:
Q  78 aaaagtgatttttacaatcaaatttattgttcaac 112  Q
    |||||||||||||||| ||||||||||||||||||    
T  13482059 aaaagtgatttttacattcaaatttattgttcaac 13482093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 44439294 - 44439340
Alignment:
Q  78 aaaagtgatttttacaatcaaatttattgttcaactcactttcacat 124  Q
    |||| ||||||| ||| ||||||||||||||||||||||||| ||||    
T  44439294 aaaattgattttaacactcaaatttattgttcaactcacttttacat 44439340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 13238849 - 13238886
Alignment:
Q  87 ttttacaatcaaatttattgttcaactcactttcacat 124  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  13238849 ttttacactcaaatttatttttcaactcactttcacat 13238886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 13475915 - 13475956
Alignment:
Q  78 aaaagtgatttttacaatcaaatttattgttcaactcacttt 119  Q
    |||||||||||||||| | ||||||||||||||| |||||||    
T  13475915 aaaagtgatttttacacttaaatttattgttcaaatcacttt 13475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 16013750 - 16013714
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  16013750 tgatttttacactcaaatttattggtcaactcacttt 16013714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 37420235 - 37420199
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  37420235 tgatttttacactcaaatttattattcaactcacttt 37420199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 44147991 - 44147955
Alignment:
Q  83 tgatttttacaatcaaatttattgttcaactcacttt 119  Q
    ||||||||||  |||||||||||||||||||||||||    
T  44147991 tgatttttactttcaaatttattgttcaactcacttt 44147955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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