View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6386_low_20 (Length: 225)

Name: NF6386_low_20
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6386_low_20
NF6386_low_20
[»] chr8 (4 HSPs)
chr8 (1-207)||(4619159-4619365)
chr8 (30-191)||(4296939-4297100)
chr8 (22-191)||(4788080-4788249)
chr8 (137-207)||(1846095-1846165)
[»] chr5 (1 HSPs)
chr5 (3-207)||(16348619-16348823)
[»] chr1 (9 HSPs)
chr1 (30-191)||(43044499-43044660)
chr1 (30-191)||(43067331-43067492)
chr1 (30-191)||(43083343-43083504)
chr1 (4-191)||(3300207-3300394)
chr1 (30-207)||(7891556-7891733)
chr1 (3-184)||(38138487-38138668)
chr1 (1-118)||(45984386-45984503)
chr1 (8-191)||(43077208-43077391)
chr1 (22-74)||(50911932-50911984)
[»] chr4 (2 HSPs)
chr4 (4-191)||(4230938-4231125)
chr4 (31-200)||(19965166-19965335)
[»] chr6 (2 HSPs)
chr6 (4-114)||(7520419-7520529)
chr6 (4-114)||(7529956-7530066)
[»] chr2 (3 HSPs)
chr2 (7-117)||(33860310-33860420)
chr2 (22-78)||(34690331-34690387)
chr2 (22-78)||(34712743-34712799)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4619159 - 4619365
Alignment:
Q  1 acacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4619159 acacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccaggg 4619258  T
Q  101 tgattcctgatgataacacatgagatgaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4619259 tgattcctgatgataacacatgagatgaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcag 4619358  T
Q  201 acacatt 207  Q
    |||||||    
T  4619359 acacatt 4619365  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 4296939 - 4297100
Alignment:
Q  30 caaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg-- 127  Q
    |||| ||||||| | |||||||||||||||| ||||||| |||||||||||| | | ||||||||| |||||||||  ||||||||  ||||||||||      
T  4296939 caaatttgacaggaatgtgggaggtgtggcagtgaagaataggtgtatagccttcttcaatctggctagggtgatttgtgatgata--acatgagatgta 4297036  T
Q  128 aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    |||| |    |||||||||||||||||| || || ||||||| ||||||||||| |||||||||    
T  4297037 aagtgagtgacctccttggctgggtcatcctcggggtttgaggcaacatagccttgcttgagat 4297100  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 4788249 - 4788080
Alignment:
Q  22 aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacat 121  Q
    ||||| |||||| | ||||||| | |||||||||||||| ||||||| ||| |||||||| ||| ||||||| |||||||||||  ||||||||  ||||    
T  4788249 aagctcatcaaattcgacagcaatttgggaggtgtggcagtgaagaataggcgtatagcctttttcaatctgtccagggtgatttgtgatgata--acat 4788152  T
Q  122 gagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    ||||||  |||| ||| |||||||||||    |||| | ||| |||| |||||||||||||| |||||||||    
T  4788151 gagatgtaaagtaatcggcctccttggccacatcatccatggtgttttagacaacatagccttgcttgagat 4788080  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 1846095 - 1846165
Alignment:
Q  137 gcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacatt 207  Q
    |||||| | |||||| || ||| ||||| |||| |||||||||||||| |||||| || ||||||||||||    
T  1846095 gcctccatagctgggccacgctgggagtgtgaggcaacatagcctcgcctgagatccttagcagacacatt 1846165  T

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Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 16348619 - 16348823
Alignment:
Q  3 acctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtg 102  Q
    ||||||| | |||||| ||||||||| |||||||||||||| ||| |||||||||||| | ||||||||||||||| || ||| |||| |||||||||||    
T  16348619 acctgtctaccttggcaagaagcttagcaaacttgacagcaatgtaggaggtgtggcagttaagaacaggtgtataacccttttcaatttggccagggtg 16348718  T
Q  103 attcctgatgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcag 200  Q
    |||| ||||||||||   |||||||  ||||||   |||||||||||||||| |||||||||||||||| |||||||||||||  |||||||  || |||    
T  16348719 attcgtgatgataact--tgagatgtaaagttaatggcctccttggctgggtgatgcttggagtttgaggcaacatagcctcggctgagatgtgcatcag 16348816  T
Q  201 acacatt 207  Q
    |||||||    
T  16348817 acacatt 16348823  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 43044499 - 43044660
Alignment:
Q  30 caaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg-- 127  Q
    |||||||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | |||||  ||| |||||||      
T  43044499 caaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgattcattatgat--cacttgagatgta 43044596  T
Q  128 aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    |||||| | ||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||    
T  43044597 aagttagcagcctccttggctgggtcatccttggagtttgaggcaacatacccacgcttgagat 43044660  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 43067492 - 43067331
Alignment:
Q  30 caaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg-- 127  Q
    |||||||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | |||||  ||| |||||||      
T  43067492 caaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgattcattatgat--cacttgagatgta 43067395  T
Q  128 aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    |||||| | ||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||    
T  43067394 aagttagcagcctccttggctgggtcatccttggagtttgaggcaacatacccacgcttgagat 43067331  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 43083343 - 43083504
Alignment:
Q  30 caaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg-- 127  Q
    |||||||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| |||||||  ||| |||||||      
T  43083343 caaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgattcatgatgat--cacttgagatgta 43083440  T
Q  128 aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    |||||| | || |||||||||||||||| ||||||||||||| ||||||| || ||||||||||    
T  43083441 aagttagcagcttccttggctgggtcatccttggagtttgaggcaacatacccacgcttgagat 43083504  T

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Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 3300207 - 3300394
Alignment:
Q  4 cctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtga 103  Q
    |||||||||||| |  | ||||| | |||| ||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||    
T  3300207 cctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtga 3300306  T
Q  104 ttcctgatgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    ||| | |||||  ||| |||||||  |||||| | ||||||||||| ||||||| ||||||||||||| ||||||| || ||||||||||    
T  3300307 ttcataatgat--cacttgagatgtaaagttagcagcctccttggcagggtcatccttggagtttgaggcaacataaccacgcttgagat 3300394  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 7891733 - 7891556
Alignment:
Q  30 caaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg-- 127  Q
    |||||||||||||| |||||||||||||||| |  |||| ||||||||||||||||| |||||||||||| ||||||  |||||||  ||||||||||      
T  7891733 caaacttgacagcaatgtgggaggtgtggcagtcgagaataggtgtatagccatttctaatctggccaggatgattcaagatgata--acatgagatgta 7891636  T
Q  128 aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacatt 207  Q
    || | | | |||||| | |||||| || |||||||||||||| |||||||||||||| |||||| || ||||||||||||    
T  7891635 aattcagcagcctccatagctgggccacgcttggagtttgaggcaacatagcctcgcctgagatccttagcagacacatt 7891556  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 38138668 - 38138487
Alignment:
Q  3 acctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtg 102  Q
    ||||||||| |||||  | ||||||| |||||||||||| |  ||||||||||||||| |  |||| ||||||||||||||||  |||| ||||||  ||    
T  38138668 acctgtcaaacttggtaacaagcttagcaaacttgacaggaacgtgggaggtgtggcagtccagaataggtgtatagccattttgaatccggccagtttg 38138569  T
Q  103 attcctgatgataacacatgagatgaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgc 184  Q
    |||| ||||||||||||  ||  | || ||| | |||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  38138568 attcgtgatgataacacgggatgtaaatttagcagcctccgtggctgggtcatgcttggagtctgaggcaacatagcctcgc 38138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 45984503 - 45984386
Alignment:
Q  1 acacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccaggg 100  Q
    ||||||||||| |||||  | ||||| | |||||||||||||| |||||||||||||||| | |||||||||||| |||||||||| |||||||||||||    
T  45984503 acacctgtcaaccttggaaataagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacaggtgtgtagccatttcgaatctggccaggg 45984404  T
Q  101 tgattcctgatgataaca 118  Q
    |||||| | |||||||||    
T  45984403 tgattcgtaatgataaca 45984386  T

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Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 43077391 - 43077208
Alignment:
Q  8 tcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcc 107  Q
    ||||||||||  | ||||| |||||||||||||  | ||||| |||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||     
T  43077391 tcaatcttggtaacaagctcatcaaacttgacaagaatgtggaaggtgtggcagtgaagaacaggtgcatagccattttcaatcttgccagggtgattca 43077292  T
Q  108 tgatgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    ||| |  |  || |||||||  |||||| | ||||||||||||||||||| | ||||||| ||| |||||||||| | ||||||||    
T  43077291 tgacg--acgacttgagatgtaaagttagcggcctccttggctgggtcatccatggagttagaggcaacatagccactcttgagat 43077208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 50911932 - 50911984
Alignment:
Q  22 aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtg 74  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||    
T  50911932 aagcttagcaaacttgacagcaatgttggacgtgtggcaatgaagaacaggtg 50911984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 4230938 - 4231125
Alignment:
Q  4 cctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtga 103  Q
    |||||||||||| |  | ||||| | |||||||||| ||| |||||||||||||||| | ||||||||| | ||| ||||||||||||||||||||||||    
T  4230938 cctgtcaatcttagtaacaagctcagcaaacttgactgcaatgtgggaggtgtggcagtcaagaacaggggcataaccatttccaatctggccagggtga 4231037  T
Q  104 ttcctgatgataacacatgaga--tgaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagat 191  Q
    ||| |||| ||  ||| |||||  |||||||| | ||||||||||||||||||| ||||| ||||||| ||||||| || ||||||||||    
T  4231038 ttcatgataat--cacctgagatgtgaagttagcagcctccttggctgggtcatccttggtgtttgaggcaacataaccacgcttgagat 4231125  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 19965335 - 19965166
Alignment:
Q  31 aaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatgaag 130  Q
    ||||| ||||||| |||||||||||||||| | ||||||||||||||||||| ||  ||||  ||||||||  ||  | ||||||| | | ||  | |||    
T  19965335 aaactcgacagcaatgtgggaggtgtggcagtcaagaacaggtgtatagccagtttgaatcatgccagggtcctttgtaatgataagataagatgtaaag 19965236  T
Q  131 ttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcag 200  Q
    | | | ||| || ||||||||||||  |||||||||||| ||||||| ||| ||| ||||| || |||||    
T  19965235 tcagcggcccccatggctgggtcattgttggagtttgaggcaacataacctggctggagatccttagcag 19965166  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 7520529 - 7520419
Alignment:
Q  4 cctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtga 103  Q
    ||||||||||||||  | ||| | | ||||||| |||||| |||| |||||||||||||  || || |||| ||| |||||||||||||| ||||||||     
T  7520529 cctgtcaatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaatcgagcactggtgcatatccatttccaatctgtccagggtgg 7520430  T
Q  104 ttcctgatgat 114  Q
    ||| |||||||    
T  7520429 ttcatgatgat 7520419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 7530066 - 7529956
Alignment:
Q  4 cctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtga 103  Q
    ||||||||||||||  | ||| | | ||||||| |||||| |||| |||||||||||||  || || |||| ||| |||||||||||||| ||||||||     
T  7530066 cctgtcaatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaatcgagcactggtgcatatccatttccaatctgtccagggtgg 7529967  T
Q  104 ttcctgatgat 114  Q
    ||| |||||||    
T  7529966 ttcatgatgat 7529956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 33860310 - 33860420
Alignment:
Q  7 gtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattc 106  Q
    ||||| |||||| | ||||| | ||||| ||||||||  ||||||||||||||| | ||||| ||||||| |||| |||| |||| ||||||||| |||     
T  33860310 gtcaaccttggcaataagctcaacaaacatgacagcaacgtgggaggtgtggcagtcaagaataggtgtaaagccttttctaatcaggccagggtcattt 33860409  T
Q  107 ctgatgataac 117  Q
     ||||||||||    
T  33860410 gtgatgataac 33860420  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 34690331 - 34690387
Alignment:
Q  22 aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtata 78  Q
    ||||||| |||||||||||||||||||||||| |||||| | ||| ||||| |||||    
T  34690331 aagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacaggagtata 34690387  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 34712743 - 34712799
Alignment:
Q  22 aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtata 78  Q
    ||||||| |||||||||||||||||||||||| |||||| | ||| ||||| |||||    
T  34712743 aagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacaggagtata 34712799  T

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