View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_low_4 (Length: 427)
Name: NF6386_low_4
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 200 - 420
Target Start/End: Complemental strand, 11349466 - 11349251
Alignment:
| Q |
200 |
gggacttgtattgtgtaaaatttgaaacatgtttgacaaatttacataatatgnnnnnnnntattgcagtgacaaaatttaagattcaaattttgaaaca |
299 |
Q |
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| T |
11349466 |
gggacatgtattgtgtaaaatttgtaacatgtttgacgaatttacataatatgaaaaaaa--atcaaaatgacaaaatttaagattcaaattttgaaaca |
11349369 |
T |
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| Q |
300 |
tcaatagagatcgatatgcatagttgggaaaatatgaaaattaacaatttagaannnnnnnaaatcaaaaaattaatgaaacgaaaagtattattaataa |
399 |
Q |
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| T |
11349368 |
tatatagagatcgatatgcatagttgggaaaatttgaaa---aacaatttggaatttttttaaattaaaaaattaatgaagcgataagtattattaataa |
11349272 |
T |
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| Q |
400 |
caatgattttattgatgatgt |
420 |
Q |
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| T |
11349271 |
taatgattttattgatgatgt |
11349251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 11349648 - 11349527
Alignment:
| Q |
21 |
ttggcctatttgtttaaatttcnnnnnnnttgtgataaaggtataaatatcaaaagaaaagaagtacacaatgggaattttaaaatattagtaactttag |
120 |
Q |
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| T |
11349648 |
ttggcctatttgtttaaattgcaaaaaaattgtgataaaggtataaatatcaaaagaaaagaggtacacaatgggaattttaaaatattagtaactttag |
11349549 |
T |
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| Q |
121 |
aaaacttgaggtaccaatatgc |
142 |
Q |
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| T |
11349548 |
aaaacttgaggtaccaatatgc |
11349527 |
T |
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