View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6386_low_5 (Length: 422)

Name: NF6386_low_5
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6386_low_5
NF6386_low_5
[»] chr7 (24 HSPs)
chr7 (249-419)||(6350344-6350514)
chr7 (18-105)||(6350621-6350708)
chr7 (235-380)||(33387490-33387637)
chr7 (243-373)||(7003524-7003653)
chr7 (243-373)||(7049395-7049524)
chr7 (304-380)||(13072043-13072119)
chr7 (284-380)||(21420055-21420151)
chr7 (261-380)||(32198872-32198991)
chr7 (247-311)||(36659070-36659134)
chr7 (244-320)||(44832729-44832805)
chr7 (244-292)||(49010640-49010688)
chr7 (260-327)||(23581250-23581317)
chr7 (245-327)||(23090231-23090313)
chr7 (244-326)||(28836988-28837070)
chr7 (272-380)||(8722525-8722633)
chr7 (243-302)||(8866941-8867000)
chr7 (253-327)||(31251965-31252039)
chr7 (291-337)||(48614137-48614183)
chr7 (278-327)||(553569-553618)
chr7 (305-382)||(8867640-8867717)
chr7 (244-325)||(33386831-33386911)
chr7 (305-382)||(33685745-33685822)
chr7 (277-373)||(32073529-32073625)
chr7 (243-291)||(33686461-33686509)
[»] chr5 (12 HSPs)
chr5 (243-380)||(23034862-23034998)
chr5 (243-380)||(30297107-30297242)
chr5 (243-311)||(15959146-15959214)
chr5 (246-321)||(8788726-8788801)
chr5 (261-319)||(20368293-20368351)
chr5 (244-380)||(8788018-8788156)
chr5 (243-302)||(12278065-12278124)
chr5 (260-319)||(20362932-20362991)
chr5 (243-311)||(10036806-10036873)
chr5 (243-311)||(26282518-26282585)
chr5 (243-311)||(36292821-36292888)
chr5 (243-311)||(39435596-39435663)
[»] chr4 (34 HSPs)
chr4 (260-382)||(20628655-20628777)
chr4 (244-380)||(20635493-20635629)
chr4 (258-380)||(2941386-2941508)
chr4 (258-380)||(3222232-3222354)
chr4 (260-358)||(5290651-5290749)
chr4 (259-321)||(33846480-33846542)
chr4 (243-373)||(26546456-26546588)
chr4 (243-311)||(13390648-13390716)
chr4 (277-373)||(31854155-31854250)
chr4 (243-302)||(28876524-28876583)
chr4 (277-327)||(13502487-13502537)
chr4 (243-380)||(9415797-9415932)
chr4 (243-311)||(34406484-34406551)
chr4 (243-311)||(44157522-44157590)
chr4 (305-380)||(3292805-3292880)
chr4 (243-302)||(30215956-30216015)
chr4 (243-302)||(33135654-33135713)
chr4 (241-300)||(56226192-56226251)
chr4 (244-302)||(42332983-42333041)
chr4 (243-297)||(50204302-50204356)
chr4 (284-380)||(15742705-15742799)
chr4 (287-380)||(29094332-29094425)
chr4 (305-382)||(42333685-42333762)
chr4 (331-380)||(56226267-56226316)
chr4 (243-311)||(1818554-1818621)
chr4 (308-380)||(9070467-9070538)
chr4 (243-311)||(13013088-13013155)
chr4 (243-311)||(25931609-25931676)
chr4 (243-311)||(26438479-26438546)
chr4 (243-311)||(26449622-26449690)
chr4 (243-311)||(36381549-36381616)
chr4 (243-311)||(43356804-43356871)
chr4 (243-311)||(47501673-47501740)
chr4 (304-380)||(48130161-48130237)
[»] chr8 (13 HSPs)
chr8 (244-380)||(33947257-33947393)
chr8 (243-311)||(3436131-3436199)
chr8 (243-373)||(9878118-9878247)
chr8 (261-320)||(15863523-15863582)
chr8 (243-292)||(32539693-32539742)
chr8 (287-380)||(33532980-33533073)
chr8 (244-380)||(33947628-33947763)
chr8 (244-343)||(40401350-40401449)
chr8 (243-380)||(29352261-29352395)
chr8 (243-311)||(24019591-24019658)
chr8 (243-311)||(28524098-28524165)
chr8 (284-368)||(33534788-33534872)
chr8 (243-311)||(39915414-39915481)
[»] chr3 (18 HSPs)
chr3 (261-325)||(19814987-19815052)
chr3 (234-326)||(10842491-10842583)
chr3 (253-380)||(5177104-5177231)
chr3 (245-376)||(38415649-38415783)
chr3 (243-301)||(5136191-5136249)
chr3 (244-302)||(11017480-11017538)
chr3 (269-358)||(8257706-8257795)
chr3 (265-380)||(219475-219590)
chr3 (246-380)||(16094283-16094418)
chr3 (277-327)||(218796-218846)
chr3 (245-311)||(27936081-27936147)
chr3 (243-292)||(29564382-29564431)
chr3 (261-302)||(35938141-35938182)
chr3 (247-327)||(485159-485239)
chr3 (243-311)||(19391046-19391113)
chr3 (243-311)||(22967644-22967711)
chr3 (243-311)||(34083322-34083389)
chr3 (243-311)||(39772690-39772757)
[»] chr2 (19 HSPs)
chr2 (260-380)||(21556283-21556403)
chr2 (262-345)||(18829074-18829157)
chr2 (244-327)||(37621905-37621988)
chr2 (243-349)||(15441489-15441595)
chr2 (278-380)||(18829830-18829932)
chr2 (235-380)||(17373669-17373814)
chr2 (243-303)||(7071742-7071802)
chr2 (243-311)||(17444236-17444303)
chr2 (243-311)||(26161903-26161970)
chr2 (305-376)||(26238130-26238201)
chr2 (261-320)||(26591296-26591355)
chr2 (243-285)||(12756065-12756107)
chr2 (243-380)||(15512385-15512522)
chr2 (244-330)||(30325429-30325521)
chr2 (277-350)||(40654140-40654213)
chr2 (243-311)||(771632-771700)
chr2 (243-311)||(6403004-6403071)
chr2 (243-311)||(18982443-18982510)
chr2 (243-311)||(41250833-41250900)
[»] chr1 (9 HSPs)
chr1 (235-359)||(17458081-17458204)
chr1 (243-311)||(17446191-17446259)
chr1 (243-311)||(41971457-41971525)
chr1 (244-311)||(15209490-15209557)
chr1 (245-311)||(3829883-3829949)
chr1 (261-380)||(17745041-17745162)
chr1 (264-379)||(9901855-9901968)
chr1 (258-380)||(3829166-3829291)
chr1 (333-379)||(33658895-33658941)
[»] scaffold0134 (1 HSPs)
scaffold0134 (253-380)||(18213-18340)
[»] chr6 (5 HSPs)
chr6 (234-349)||(16793782-16793897)
chr6 (245-380)||(23217804-23217939)
chr6 (280-358)||(28932958-28933036)
chr6 (305-380)||(28996913-28996988)
chr6 (243-311)||(399517-399584)
[»] scaffold0154 (1 HSPs)
scaffold0154 (243-311)||(32113-32181)
[»] scaffold0002 (1 HSPs)
scaffold0002 (243-311)||(479657-479724)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 249 - 419
Target Start/End: Complemental strand, 6350514 - 6350344
Alignment:
Q  249 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350514 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 6350415  T
Q  349 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttcttctcactc 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6350414 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttcttatcactc 6350344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 6350708 - 6350621
Alignment:
Q  18 cttcttccattcttaacggttacaacaaaggttaaaaagagagagttggtaataaagaaattccattttctccatcgttttccctctt 105  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6350708 cttcttccattcttaacggttacaacagaggttaaagagagagagttagtaataaagaaattccattttctccatcgttttccctctt 6350621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 380
Target Start/End: Original strand, 33387490 - 33387637
Alignment:
Q  235 tctagttcgcttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagag 332  Q
    ||||| ||||| |||||||| || | ||||||| ||||||| ||||   | || |||||||||||||| | ||| ||||||||||||| |||||| ||      
T  33387490 tctaggtcgctcttttggacgttgcatatattaaagggtcaaaaatgggaaaaaaatctcaaattacagggttataatatgtgttttttattttatagga 33387589  T
Q  333 tcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||| ||||||| ||||||||| |  ||||||||  ||||||||    
T  33387590 tcattgtttagacttcatgtatattacaaggtcaattttgacaattaa 33387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 7003524 - 7003653
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 341  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7003524 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7003621  T
Q  342 agacttcgtgtatattatagagtcaatttcaa 373  Q
    |||||||  |||||||| |  |||||||||||    
T  7003622 agacttcacgtatattacatggtcaatttcaa 7003653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 7049395 - 7049524
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 341  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7049395 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7049492  T
Q  342 agacttcgtgtatattatagagtcaatttcaa 373  Q
    |||||||  |||||||| |  |||||||||||    
T  7049493 agacttcacgtatattacatggtcaatttcaa 7049524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 13072119 - 13072043
Alignment:
Q  304 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||||||||||||||||| ||||||  | |||||| |||||||||||  ||||||| || ||||||||||| ||||||    
T  13072119 ttagaatatgtgttttttattttacggggtcatttttcagacttcgcatatattacagggtcaatttcaataattaa 13072043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 21420151 - 21420055
Alignment:
Q  284 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||| |||||||||| | ||||||| | |||||||  ||||| ||| ||||| ||||||||||  |||||||| |  ||||||||||||||||||    
T  21420151 aagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatattacaaggtcaatttcaacaattaa 21420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 32198991 - 32198872
Alignment:
Q  261 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagtcattgttcagacttcgtgtatattat 359  Q
    ||||||| |||| || |||||| ||||||||||||||| | | |||||||||||||||||| ||||| |||| ||||| ||||||||  | ||||||||     
T  32198991 tatattagagggccaaaaataagaagaatctcaaattatagggttagaatatgtgtttttatttttacaaga-tcatttttcagactatgcgtatattac 32198893  T
Q  360 agagtcaatttcaacaattaa 380  Q
    |  |||||||| || ||||||    
T  32198892 aaggtcaatttaaataattaa 32198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 36659070 - 36659134
Alignment:
Q  247 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||  ||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||    
T  36659070 ttttggacttcgcgtatattacagggttataaataataaaaatctcaaattacatggtcagaata 36659134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 44832729 - 44832805
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 320  Q
    ||||||||||||| |  ||  ||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||    
T  44832729 cttttttggacttcaactaatttacagggtcaaaaataataagaatctcaaattacagggttaaaatatgtgttttt 44832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 49010640 - 49010688
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctc 292  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  49010640 cttttttggacttcacgtatattacagggtcataaataataaaaatctc 49010688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 23581317 - 23581250
Alignment:
Q  260 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    |||||||||||||| | || ||| |||| |||||||||||| | ||||||||||| ||||||||||||    
T  23581317 gtatattatagggttaaaactaaaaagattctcaaattacagggttagaatatgtatttttaatttta 23581250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 23090231 - 23090313
Alignment:
Q  245 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    ||||||||||||||  ||||||| ||||||  ||||||||| ||| | |||||||| | ||| ||||||||||||| ||||||    
T  23090231 ttttttggactttaactatattaaagggtcgaaaataataaaaatattaaattacaagattataatatgtgttttttatttta 23090313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 28837070 - 28836988
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 326  Q
    ||||| ||||||| || ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| || ||||||| ||||    
T  28837070 cttttctggacttcacatatattacagggtcataaataataagaatatcaaataacaaggttaaaatttgcgtttttattttt 28836988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 380
Target Start/End: Complemental strand, 8722633 - 8722525
Alignment:
Q  272 gtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttc 371  Q
    ||||||||||||||||||||| ||||||| | | | ||||| ||||||| |||||| | |||||||  ||||||||    ||||||| || | |||||||    
T  8722633 gtcataaataataagaatctcgaattacagggtcataatatatgttttttattttacaaagtcatttatcagactttacatatattacagggacaatttc 8722534  T
Q  372 aacaattaa 380  Q
    || ||||||    
T  8722533 aataattaa 8722525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 8867000 - 8866941
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 302  Q
    |||||||||||||| |||||||||| | ||| ||||||||||| ||| || |||||||||    
T  8867000 gcttttttggacttcacgtatattacaaggttataaataataaaaatttcgaattacatg 8866941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 31252039 - 31251965
Alignment:
Q  253 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    ||||| ||||||||| | ||| | | ||||||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  31252039 actttgcgtatattacaaggttaaagataataagaatatcaaaatatatggttagaatatgtgttttttatttta 31251965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 48614137 - 48614183
Alignment:
Q  291 tcaaattacatgtttagaatatgtgtttttaattttaaagagtcatt 337  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  48614137 tcaaattacatatttaaaatatgtgtttttatttttacagagtcatt 48614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 553569 - 553618
Alignment:
Q  278 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||||||||    
T  553569 aataagaataatttcaaattacatgactagaatatgtgtttttaatttta 553618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 8867640 - 8867717
Alignment:
Q  305 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 382  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   ||||||||||| |||||||| |||||||||||    
T  8867640 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattatagggtcaatttgaacaattaatc 8867717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 33386911 - 33386831
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattt 325  Q
    ||||||||||||   | ||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||| ||||||| ||||    
T  33386911 cttttttggactacgcatatattagagggtca-aaacaaaaagaatctcaaattacatgattaaaatatatgttttttattt 33386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 33685822 - 33685745
Alignment:
Q  305 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 382  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||| || |||||||| |||||||||||    
T  33685822 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaatc 33685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 32073529 - 32073625
Alignment:
Q  277 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 373  Q
    |||||||||||||  ||||||||||| ||| |||||||| | || |||||| |   ||||| |||||||||||  ||||||| |  |||||||||||    
T  32073529 aaataataagaattgcaaattacatgattaaaatatgtgctatttattttacatgatcatttttcagacttcgcatatattacaaggtcaatttcaa 32073625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 33686461 - 33686509
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatct 291  Q
    ||||||| |||||| |||||||||| ||||| ||||||||||| |||||    
T  33686461 gctttttaggacttcacgtatattacagggttataaataataaaaatct 33686509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 23034862 - 23034998
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 342  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||||||||| | | ||||||| ||||| |||||| ||||||||| ||||    
T  23034862 gcttttttggacttcacgtatattatagggtcataaatagtaaaaatatcgaattacatggtcataatatgtattttt-attttacagagtcatttttca 23034960  T
Q  343 gacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||||||||||| ||  |||||||||| ||||||    
T  23034961 gacttcgtgtatattacaggatcaatttcaataattaa 23034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 380
Target Start/End: Complemental strand, 30297242 - 30297107
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 342  Q
    ||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||| | |||||||||||| |||| |||| | |  |||||| || |    
T  30297242 gcttttttggactttacgtatatcacatgatcataaataataagaatctcgaattacagggttagaatatgtgatttttatttaacaacgtcatt-ttga 30297144  T
Q  343 gacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||| ||||||| |  ||||||||||| ||||||    
T  30297143 gacttcgtttatattaca-tgtcaatttcaataattaa 30297107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 15959214 - 15959146
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  15959214 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacatgttcagaata 15959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 8788726 - 8788801
Alignment:
Q  246 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 321  Q
    |||||||||||||  |||||||||| || | ||||||||||||||||||||||||||  || ||||||||||||||    
T  8788726 tttttggactttaactatattatagagtaaaaaataataagaatctcaaattacatggctaaaatatgtgttttta 8788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 20368351 - 20368293
Alignment:
Q  261 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 319  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||| ||||    
T  20368351 tatattatatggtcaaaaataagaagaatctcaaattacaagtttaaaatatgtctttt 20368293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 380
Target Start/End: Complemental strand, 8788156 - 8788018
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttc 341  Q
    |||||||||||   |||||||||||||||||| |||||  | || ||||||||||||||   ||||||||| ||||||| |||||| || || ||| |||    
T  8788156 cttttttggaccacacgtatattatagggtcaaaaataagaaaaaaatctcaaattacaaagttagaatatttgttttttattttacagggttatttttc 8788057  T
Q  342 agacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||   |||  ||| ||| || |||||||| |||||||||    
T  8788056 aggtatcgcatattttacagtgtcaatttaaacaattaa 8788018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 12278124 - 12278065
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 302  Q
    |||||||||||||| | |||||||| ||||| ||||||||||| ||| || |||||||||    
T  12278124 gcttttttggacttcatgtatattacagggttataaataataaaaatttcgaattacatg 12278065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 20362991 - 20362932
Alignment:
Q  260 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 319  Q
    |||||||||| ||||| |||||| ||||||||||||||||| | ||| ||||||| ||||    
T  20362991 gtatattatatggtcaaaaataagaagaatctcaaattacaaggttaaaatatgtctttt 20362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 10036806 - 10036873
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  10036806 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 10036873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 26282585 - 26282518
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26282585 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26282518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 36292888 - 36292821
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36292888 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36292821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 39435596 - 39435663
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    |||||||||||||| |||||| ||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39435596 gcttttttggacttcacgtatcttacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39435663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 382
Target Start/End: Complemental strand, 20628777 - 20628655
Alignment:
Q  260 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 359  Q
    |||||||| ||||| | ||||||||||||| |||||||||| | ||  ||||||||||||| |||||| | ||||||| ||||||||||  ||||||||     
T  20628777 gtatattacagggtaaaaaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatattac 20628678  T
Q  360 agagtcaatttcaacaattaatc 382  Q
    || ||||||||||||||| ||||    
T  20628677 agggtcaatttcaacaatcaatc 20628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 380
Target Start/End: Complemental strand, 20635629 - 20635493
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 343  Q
    ||||||||||||| | ||| |||||||||| | ||||||| ||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| || ||    
T  20635629 cttttttggacttaatgtacattatagggtaaaaaataatgagaatatcaaattacaaggttaaaatatgtgttttttattttacaggttcatttttgag 20635530  T
Q  344 acttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    | ||| | ||||||  |  |||||||| |||||||||    
T  20635529 atttcatatatattgcaaggtcaatttaaacaattaa 20635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 380
Target Start/End: Original strand, 2941386 - 2941508
Alignment:
Q  258 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 357  Q
    |||| ||||||||||||| |||||  |||||| ||||||||||   ||| |||||||||||||| ||||| || |||||| |||||||  ||  ||||||    
T  2941386 acgtgtattatagggtcaaaaatagaaagaatatcaaattacagagttaaaatatgtgtttttatttttacagggtcatttttcagaccacgcctatatt 2941485  T
Q  358 atagagtcaatttcaacaattaa 380  Q
    | |   |||||||||||||||||    
T  2941486 acaagatcaatttcaacaattaa 2941508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 380
Target Start/End: Original strand, 3222232 - 3222354
Alignment:
Q  258 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 357  Q
    |||||||||||||||||| |||||| ||||||||||||| |||   ||||||||||| ||||| |||||| ||  | ||| |||| || | |||||| ||    
T  3222232 acgtatattatagggtcaaaaataagaagaatctcaaatgacagagttagaatatgtatttttcattttacaggattatttttcaaacattgtgtatttt 3222331  T
Q  358 atagagtcaatttcaacaattaa 380  Q
    |  | |||||||| |||||||||    
T  3222332 acggggtcaatttaaacaattaa 3222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 5290749 - 5290651
Alignment:
Q  260 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 358  Q
    |||||||||| ||| | |||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || || ||| || ||||||| ||| |||||    
T  5290749 gtatattatatggtaaaaaataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttcatgtgtatta 5290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 33846480 - 33846542
Alignment:
Q  259 cgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 321  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||    
T  33846480 cgtatattaaagggtcaaaaataagaagaatatcaaattacatggttataatatgtgttttta 33846542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 26546588 - 26546456
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatg--tgtttttaattttaaagagtcattgtt 340  Q
    |||||||||||||| |  ||||||| ||||||  ||||||||||||||||||||||||   ||||||| ||  | ||||| |||||| ||||| | | ||    
T  26546588 gcttttttggacttcaactatattacagggtccaaaataataagaatctcaaattacagagttagaatgtgttttttttttattttacagagttaatttt 26546489  T
Q  341 cagacttcgtgtatattatagagtcaatttcaa 373  Q
    |||||||||  ||||||| ||  ||||||||||    
T  26546488 cagacttcgcatatattacaggatcaatttcaa 26546456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 13390716 - 13390648
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  13390716 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 13390648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 31854155 - 31854250
Alignment:
Q  277 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 373  Q
    ||||||||||||| |||||||||| | ||| ||||| ||||||| |||||| || |||||| ||||||||||   ||||||| || |||||||||||    
T  31854155 aaataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttcacatatattacag-gtcaatttcaa 31854250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 28876583 - 28876524
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 302  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||||||||    
T  28876583 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatg 28876524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 13502487 - 13502537
Alignment:
Q  277 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  13502487 aaataagaagaatctcaaattatatgtttaaaatatatgtttttaatttta 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 9415797 - 9415932
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 342  Q
    |||||||||||||| |  |||| || ||||||| ||| ||| |||||||||||||||| | ||| |||||||||| || | ||||  | || ||| ||||    
T  9415797 gcttttttggacttcaactataatacagggtcaaaaagaatcagaatctcaaattacagggttataatatgtgttattta-tttagtgggt-atttttca 9415894  T
Q  343 gacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||  ||||||| || ||||||||||| ||||||    
T  9415895 gacttcgcatatattacagggtcaatttcaataattaa 9415932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 34406551 - 34406484
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||| ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34406551 gcttttttggactttgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34406484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 44157522 - 44157590
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||| |||| | ||||||    
T  44157522 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattgcatggtcagaata 44157590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 3292805 - 3292880
Alignment:
Q  305 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  3292805 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 3292880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 30216015 - 30215956
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 302  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  30216015 gcttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 30215956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 33135713 - 33135654
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 302  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| |||||||||    
T  33135713 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatg 33135654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 56226192 - 56226251
Alignment:
Q  241 tcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattaca 300  Q
    ||||||||||||||||  ||||||||||  ||||  ||||||||||||| ||||||||||    
T  56226192 tcgcttttttggacttctcgtatattatttggtctcaaataataagaatatcaaattaca 56226251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 42333041 - 42332983
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 302  Q
    |||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  42333041 cttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 42332983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 50204356 - 50204302
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 297  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  50204356 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 50204302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 15742705 - 15742799
Alignment:
Q  284 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||| |  |||| | ||||||||  | |||||||| ||| ||||||| |||||||||    
T  15742705 aagaatctcaaa--acagggttagaatatgtgtttttatttttacaaggtcagttttcagactatgcgtatattacagaatcaatttgaacaattaa 15742799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 380
Target Start/End: Complemental strand, 29094425 - 29094332
Alignment:
Q  287 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||||||||| | ||||||||||| ||||| |||||| || || ||| ||||||| | | |||| ||| || |||| ||| |||||||||    
T  29094425 aatctcaaattacagggttagaatatgtattttttattttacagggttatttttcagacattgcgtattttacagggtcattttaaacaattaa 29094332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 42333685 - 42333762
Alignment:
Q  305 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 382  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   |||||||| ||||||||||| |||||||||||    
T  42333685 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattacagagtcaatttgaacaattaatc 42333762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 56226267 - 56226316
Alignment:
Q  331 agtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||||||| || ||||||||||||||||| | ||| |||||||||||||||    
T  56226267 agtcattttttagacttcgtgtatattacaaagttaatttcaacaattaa 56226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 1818554 - 1818621
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  1818554 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 1818621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 9070538 - 9070467
Alignment:
Q  308 aatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||||||||  |||||||| |||||| ||||||||||| |||||||| |  |||||||| |||| ||||    
T  9070538 aatatgtgtttttctttttaaag-gtcatttttcagacttcgcgtatattacatggtcaatttgaacagttaa 9070467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 13013088 - 13013155
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  13013088 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 13013155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 25931609 - 25931676
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  25931609 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 25931676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 26438546 - 26438479
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26438546 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26438479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 26449622 - 26449690
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||| ||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26449622 gcttttttgaacttcgcgtatattacaggattataaataataaaaatctcgaattacatggtcagaata 26449690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 36381616 - 36381549
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36381616 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 43356804 - 43356871
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  43356804 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 43356871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 47501673 - 47501740
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  47501673 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 47501740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 48130237 - 48130161
Alignment:
Q  304 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||||||||  |||||||| |||||||||    
T  48130237 ttagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatatggtcaatttgaacaattaa 48130161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 380
Target Start/End: Complemental strand, 33947393 - 33947257
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 343  Q
    ||||||||||||| || ||||||||||||||| | |||  ||||||||||||||||| | ||| |||| ||| ||||| || || ||||||||| |||||    
T  33947393 cttttttggacttcacatatattatagggtcaaacatatgaagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcag 33947294  T
Q  344 acttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||||||  ||||||| |  |||||||| |||||||||    
T  33947293 acttcgcctatattacatggtcaatttgaacaattaa 33947257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 3436131 - 3436199
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||| |||||| ||||||||||||| ||||    
T  3436131 gcttttttggactttgcgtatattacaaggttataaataataaaaatctcgaattacatgtttaaaata 3436199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 9878118 - 9878247
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 341  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||  |||| |||||  ||| || |||| | |||    
T  9878118 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaatacatgttatttaa--ttacagggtcaattttc 9878215  T
Q  342 agacttcgtgtatattatagagtcaatttcaa 373  Q
    ||||||| ||||||||| |  |||||||||||    
T  9878216 agacttcatgtatattacatggtcaatttcaa 9878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 15863523 - 15863582
Alignment:
Q  261 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 320  Q
    ||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||| |||||    
T  15863523 tatattatagggtcaaaaataagaagtatctcaaattacaagtttggaatatgtattttt 15863582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 32539742 - 32539693
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctc 292  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  32539742 gcttttttggacttcacgtattttacagggtgataaataataagaatctc 32539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 380
Target Start/End: Original strand, 33532980 - 33533073
Alignment:
Q  287 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||||||||| | ||| ||| | || ||||| ||||| | ||||||| || |||||||||||| |||||||  ||||||| |||||||||    
T  33532980 aatctcaaattacaaggttataatttatgattttatttttacatagtcattttttagacttcgtgtacattataggatcaatttgaacaattaa 33533073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 380
Target Start/End: Original strand, 33947628 - 33947763
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 343  Q
    |||||||||||||  |||| |||| ||||||| |||||| | |||| |||||||||| | ||| ||||| |||||||| ||||| |  |||||| |||||    
T  33947628 cttttttggacttagcgtacattagagggtcaaaaataagatgaatttcaaattacagggttaaaatatatgtttttatttttacatggtcatt-ttcag 33947726  T
Q  344 acttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||||   |||||||| |  |||||||| || ||||||    
T  33947727 actttacgtatattacattgtcaatttgaataattaa 33947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 40401350 - 40401449
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 343  Q
    ||||||||||||   | ||||||||||||| | |||||| |||||| |||| ||||| | |||||||||| ||| || ||||| ||| |||||| |||||    
T  40401350 cttttttggactacgcatatattatagggttaaaaataagaagaatatcaatttacaagattagaatatgcgttatttattttcaagtgtcatttttcag 40401449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 29352261 - 29352395
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 342  Q
    ||||||||| |||| |  ||||||| ||| | | ||||||||| | |||||||||||| | |||| |||||||||||| ||||| | | |||||| ||||    
T  29352261 gcttttttgtacttcaactatattacaggataaaaaataataaaagtctcaaattacagggttaggatatgtgttttttatttt-acgggtcatttttca 29352359  T
Q  343 gacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||   ||  ||||||| |||||||||||||| ||||||    
T  29352360 ga--gcgcatatattacagagtcaatttcaataattaa 29352395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 24019658 - 24019591
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  24019658 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 24019591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 28524098 - 28524165
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  28524098 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 28524165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 368
Target Start/End: Original strand, 33534788 - 33534872
Alignment:
Q  284 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaat 368  Q
    ||||||||||||||| |   ||| ||| |||  ||||| ||||| | ||||||| || |||||||||||||||||||| ||||||    
T  33534788 aagaatctcaaattataaagttacaatttgttattttatttttacatagtcattatttagacttcgtgtatattatagggtcaat 33534872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 39915414 - 39915481
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39915414 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 19814987 - 19815052
Alignment:
Q  261 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattt 325  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  19814987 tatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtggtttttaattt 19815052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 10842491 - 10842583
Alignment:
Q  234 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 326  Q
    |||||| |||| ||| ||||| | || ||||||| |||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||    
T  10842491 atctagatcgcctttctggacatcacatatattaaagggtcataaataggaagaatatcaaattacatggttagaatatgtgtttttattttt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 5177231 - 5177104
Alignment:
Q  253 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 352  Q
    |||| |||||||||| | ||| | |||| | || ||||||||||||||||  |  ||||||||||||| |||||| ||| ||||| |||||||||| |||    
T  5177231 acttcacgtatattaaatggtaaaaaattagaaaaatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttcatgt 5177132  T
Q  353 atattatagagtcaatttcaacaattaa 380  Q
     ||||| |  |||||||| |||||||||    
T  5177131 ttattacatggtcaatttgaacaattaa 5177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 376
Target Start/End: Original strand, 38415649 - 38415783
Alignment:
Q  245 ttttttggactttacgtatattatagggtcataaa-taataagaatctcaaattacatgtttagaatatgtg--tttttaattttaaagagtcattgttc 341  Q
    |||||||||||   ||||||||||||||| | ||| ||| ||||||||||||||||| | ||| ||||||||  ||||| |||||| |  |||||| |||    
T  38415649 ttttttggactacgcgtatattatagggtaaaaaaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttc 38415748  T
Q  342 agacttcgtgtatattatagagtcaatttcaacaa 376  Q
    |||| || ||||||||| || |||||||| |||||    
T  38415749 agacatcatgtatattacagcgtcaatttgaacaa 38415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 5136191 - 5136249
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacat 301  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||    
T  5136191 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacat 5136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 11017538 - 11017480
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 302  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| || |||||||||    
T  11017538 cttttttggacttcacgtatattatagggttataaataataaaaatttcgaattacatg 11017480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 8257706 - 8257795
Alignment:
Q  269 agggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 358  Q
    |||||||||||||||||||||||  ||||||||| | | ||||||||||||| |||||| || |||||| || | |||||| | ||||||    
T  8257706 agggtcataaataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttttaaacttcgcgaatatta 8257795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 380
Target Start/End: Original strand, 219475 - 219590
Alignment:
Q  265 ttatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagt 364  Q
    |||||| |||| |||||| |||||| ||||||| || | ||| ||||| | ||||| |||||| |  |||||| ||||||| ||  |||| ||| |||||    
T  219475 ttatagagtcaaaaataagaagaatttcaaattgcaaggttaaaatatctattttttattttacaatgtcatttttcagacatcacgtattttacagagt 219574  T
Q  365 caatttcaacaattaa 380  Q
    |||||| |||||||||    
T  219575 caatttaaacaattaa 219590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 16094418 - 16094283
Alignment:
Q  246 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattttaaagagtcattgttcaga 344  Q
    ||||||||||| |  ||||||| ||||  | |||| ||||| ||||||||||||| | ||| |||||||  ||||| |||||| || |||| | ||||||    
T  16094418 tttttggacttcaactatattacagggcaaaaaattataaggatctcaaattacagggttataatatgtatttttttattttacagggtcaattttcaga 16094319  T
Q  345 cttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||  |||||||  | ||||||||||| ||||||    
T  16094318 cttcgcatatattactgggtcaatttcaataattaa 16094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 218846 - 218796
Alignment:
Q  277 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    |||||||||||||| ||||||||| | ||| ||||||||||||| ||||||    
T  218846 aaataataagaatcccaaattacagggttataatatgtgttttttatttta 218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 27936081 - 27936147
Alignment:
Q  245 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||  ||||||||| ||||| |||||||||||  ||||||||| ||||| | ||||||    
T  27936081 ttttttggacttcgcgtatattacagggttataaataataaatatctcaaatcacatggtcagaata 27936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 29564431 - 29564382
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctc 292  Q
    |||||||||||||| |||||||| | | ||||||||||||||| ||||||    
T  29564431 gcttttttggacttcacgtatatgacatggtcataaataataataatctc 29564382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 35938141 - 35938182
Alignment:
Q  261 tatattatagggtcataaataataagaatctcaaattacatg 302  Q
    |||||||| |||||| ||||||||||||||| ||||||||||    
T  35938141 tatattatggggtcaaaaataataagaatcttaaattacatg 35938182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 485239 - 485159
Alignment:
Q  247 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    |||||||| | |||||||||| ||||| | |||||  |||||||||||||||||  | |||||||| ||| |||| |||||    
T  485239 ttttggacatcacgtatattagagggtaaaaaatagaaagaatctcaaattacagatgtagaatatatgtctttattttta 485159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 19391046 - 19391113
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  19391046 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 19391113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 22967711 - 22967644
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  22967711 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 22967644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 34083389 - 34083322
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34083389 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34083322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 39772690 - 39772757
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39772690 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39772757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 21556403 - 21556283
Alignment:
Q  260 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 359  Q
    |||||||||||||||| |||| | ||||||||||||||||||  ||| ||||||| | ||| |||||| |  |||||| ||||||| |||||||| |||     
T  21556403 gtatattatagggtcaaaaattagaagaatctcaaattacatagttataatatgtatattttattttacaaggtcatttttcagacatcgtgtattttaa 21556304  T
Q  360 agagtcaatttcaacaattaa 380  Q
    |  |||| ||| |||||||||    
T  21556303 atggtcagtttaaacaattaa 21556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 18829157 - 18829074
Alignment:
Q  262 atattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagac 345  Q
    |||||||||||||| ||||||||||||||||||||||   | ||||||||||| ||||| |||||| ||  ||||| |||||||    
T  18829157 atattatagggtcaaaaataataagaatctcaaattatgaggttagaatatgtattttttattttacaggatcatttttcagac 18829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 37621905 - 37621988
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 327  Q
    |||||||||||   |||||||||||||||||| || ||| ||||||||||||||||||| ||| ||||| | ||||| ||||||    
T  37621905 cttttttggaccacacgtatattatagggtcaaaagtaagaagaatctcaaattacatggttaaaatatctattttttatttta 37621988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 15441595 - 15441489
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 342  Q
    |||||||||||||| |  ||||||| | ||| | ||||||||||||| ||||||||||   ||||||||| || |||| ||||||||| || ||| ||||    
T  15441595 gcttttttggacttcaactatattacatggtgaaaaataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttca 15441496  T
Q  343 gacttcg 349  Q
    |||||||    
T  15441495 gacttcg 15441489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 380
Target Start/End: Original strand, 18829830 - 18829932
Alignment:
Q  278 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaat 377  Q
    ||||||||||||||||||||||| | |||||||||||| |||| |||||| |  |||||| |||||||||    ||||||| |  ||||||||||| |||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactttacatatattacatggtcaatttcaataat 18829929  T
Q  378 taa 380  Q
    |||    
T  18829930 taa 18829932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 380
Target Start/End: Original strand, 17373669 - 17373814
Alignment:
Q  235 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtc 334  Q
    ||||| || ||||||||||| |  ||||||||||| ||||| |||||  |||||||||||||||||   ||||||||| | ||||| |||||| |  |||    
T  17373669 tctagatcacttttttggacctcgcgtatattataaggtcaaaaatacgaagaatctcaaattacagagttagaatatctattttttattttacatggtc 17373768  T
Q  335 attgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    ||| ||||||| | | |||| ||| ||  ||||||| |||||||||    
T  17373769 atttttcagacattgggtattttacaggctcaatttaaacaattaa 17373814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 7071802 - 7071742
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgt 303  Q
    ||||||||||||||  |||||||||  |||| ||||||||||| ||||||||| |||||||    
T  7071802 gcttttttggacttcgcgtatattagtgggttataaataataaaaatctcaaactacatgt 7071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 17444303 - 17444236
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    |||||||||||||| |||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  17444303 gcttttttggacttcacgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 17444236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 26161970 - 26161903
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  26161970 gcttttttggacttcgcgtatattacagggt-ataaataataaaaatctcgaattacatggtcagaata 26161903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 26238201 - 26238130
Alignment:
Q  305 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaa 376  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||||||||||||||| |||||    
T  26238201 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatagagtcaatttgaacaa 26238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 26591355 - 26591296
Alignment:
Q  261 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 320  Q
    ||||||||||||||| |||||| |||||| | |||||||||| |||||||| || |||||    
T  26591355 tatattatagggtcaaaaataagaagaatatgaaattacatggttagaataagtattttt 26591296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 12756107 - 12756065
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataa 285  Q
    ||||||||||||||  ||||||||||||||| |||||||||||    
T  12756107 gcttttttggacttcgcgtatattatagggttataaataataa 12756065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 15512385 - 15512522
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 342  Q
    |||||||||||||| |  ||||||| || |  | ||||||||| ||||||||||||||   ||||||||| ||||||| |||||  ||  ||||| ||||    
T  15512385 gcttttttggacttcaactatattacagagaaaaaaataataaaaatctcaaattacagagttagaatatatgttttttatttttcagcatcatttttca 15512484  T
Q  343 gacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    || ||| | ||||||  |  ||||||||||| ||||||    
T  15512485 gatttcatatatattgcatggtcaatttcaataattaa 15512522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 30325521 - 30325429
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaat------ctcaaattacatgtttagaatatgtgtttttaattttaaag 330  Q
    |||||||||||||   ||||||||||| |||| |||||| |||||       ||||||||||| | ||||||||||||||| |||||||||||    
T  30325521 cttttttggacttcgtgtatattatagagtcaaaaataagaagaaaaaaaaactcaaattacaagattagaatatgtgtttataattttaaag 30325429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 40654140 - 40654213
Alignment:
Q  277 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgt 350  Q
    |||||||||  ||||||||||| | | |||||||||||| |||| | |||| ||||| ||| ||||||||||||    
T  40654140 aaataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttcgt 40654213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 771632 - 771700
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||||| || |||||||| |||||| ||||| ||| | ||||||    
T  771632 gcttttttggacttcgcgtatattacagggttatgaataataaaaatctcgaattatatggtcagaata 771700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 6403071 - 6403004
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  6403071 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 6403004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 18982443 - 18982510
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  18982443 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 18982510  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 41250900 - 41250833
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  41250900 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 41250833  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 17458081 - 17458204
Alignment:
Q  235 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagt 333  Q
    ||||| || ||||| |||||||  | |||||||||| |||| |||||| ||||||||||||||||| |  ||||||||||||||||| ||| | |||| |    
T  17458081 tctaggtcacttttatggacttcgcatatattatagcgtcaaaaataagaagaatctcaaattaca-gagtagaatatgtgtttttattttaacaaga-t 17458178  T
Q  334 cattgttcagacttcgtgtatattat 359  Q
    |||| ||||||||  |||||||||||    
T  17458179 catttttcagactaagtgtatattat 17458204  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 17446191 - 17446259
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  17446191 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 17446259  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 41971525 - 41971457
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||||  ||||||||||| |||||||| ||||||||| ||||||    
T  41971525 gcttttttggacttcgcgtatattacagggctataaataataaaaatctcaagttacatgttcagaata 41971457  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 15209557 - 15209490
Alignment:
Q  244 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    |||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||||| ||||||    
T  15209557 cttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatgttcagaata 15209490  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 3829883 - 3829949
Alignment:
Q  245 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  3829883 ttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 3829949  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 17745041 - 17745162
Alignment:
Q  261 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt--tttaattttaaagagtcattgttcagacttcgtgtatatta 358  Q
    ||||||| | ||||| ||||||||| ||||||||||| |||| ||||||||||| ||  ||| |||||| ||  ||||| |||||||||||  |||||||    
T  17745041 tatattacacggtcaaaaataataaaaatctcaaattgcatggttagaatatgtttttattttattttacaggttcatttttcagacttcgaatatatta 17745140  T
Q  359 tagagtcaatttcaacaattaa 380  Q
     |  |||||| |||| ||||||    
T  17745141 catggtcaatgtcaataattaa 17745162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 9901855 - 9901968
Alignment:
Q  264 attatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagag 363  Q
    |||||||||||| |||||| |||||| | |||||||||| |||||  |||||||||| |||||| ||  | ||| |||| || ||| || ||||| ||||    
T  9901855 attatagggtcaaaaataagaagaatataaaattacatggttaga--atgtgttttttattttataggattatttttcaaacatcgcgtgtattacagag 9901952  T
Q  364 tcaatttcaacaatta 379  Q
    | ||||| ||||||||    
T  9901953 ttaatttgaacaatta 9901968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 380
Target Start/End: Complemental strand, 3829291 - 3829166
Alignment:
Q  258 acgtatattatag---ggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtat 354  Q
    |||||||||||||   ||||| |||||| |||||  |||| |||||   ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||    
T  3829291 acgtatattatagggtggtcaaaaataagaagaaattcaagttacaaagttagaatatatgttttgtattttacagggtcatttttcagacataatgtat 3829192  T
Q  355 attatagagtcaatttcaacaattaa 380  Q
    |||| || |||||||| |||||||||    
T  3829191 attacagggtcaatttgaacaattaa 3829166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 33658895 - 33658941
Alignment:
Q  333 tcattgttcagacttcgtgtatattatagagtcaatttcaacaatta 379  Q
    ||||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  33658895 tcatttttctgacttcgtgtatattatagagtcaatttgaacgatta 33658941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 380
Target Start/End: Original strand, 18213 - 18340
Alignment:
Q  253 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 352  Q
    |||| ||| |||||| ||||||||||||||||||||||| || ||||| | ||| ||||||| ||||  ||||||  | ||||||  ||| ||||||  |    
T  18213 acttcacgaatattacagggtcataaataataagaatcttaacttacaggattataatatgttttttatattttactgggtcatttgtcatacttcgctt 18312  T
Q  353 atattatagagtcaatttcaacaattaa 380  Q
    |||||| ||  |||||||||| ||||||    
T  18313 atattacaggatcaatttcaataattaa 18340  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 16793897 - 16793782
Alignment:
Q  234 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagt 333  Q
    |||||| ||| |||| ||||||||  |||||||| | ||| | ||||||||| | |||| ||||| |  ||||||||||||| |||| |||||| |||||    
T  16793897 atctaggtcgtttttctggactttgtgtatattacaaggtaaaaaataataaaactctcgaattatagatttagaatatgtgctttttattttacagagt 16793798  T
Q  334 cattgttcagacttcg 349  Q
     ||| |||||||||||    
T  16793797 aatttttcagacttcg 16793782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 380
Target Start/End: Original strand, 23217804 - 23217939
Alignment:
Q  245 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcaga 344  Q
    |||||||||||| ||| |||||| |  |||||||||||||||||| |  | ||||| | ||||||||||||||||  ||||||    |||||| ||||||    
T  23217804 ttttttggacttcacgaatattacaaagtcataaataataagaatattgagttacagggttagaatatgtgttttatattttactaggtcatttttcaga 23217903  T
Q  345 cttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    | ||   ||||||| || ||||||||||| ||||||    
T  23217904 catcacttatattacagggtcaatttcaataattaa 23217939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 358
Target Start/End: Original strand, 28932958 - 28933036
Alignment:
Q  280 taataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 358  Q
    |||||||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| |||||||||||  |||||||    
T  28932958 taataagaatttcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcgcatatatta 28933036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 28996988 - 28996913
Alignment:
Q  305 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 380  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  28996988 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 28996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 399517 - 399584
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  399517 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 399584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 32113 - 32181
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||    
T  32113 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaata 32181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 479724 - 479657
Alignment:
Q  243 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 311  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  479724 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 479657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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