View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6386_low_7 (Length: 404)
Name: NF6386_low_7
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6386_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 46072392 - 46072018
Alignment:
| Q |
14 |
atgaagaagatgcaactttaggtattttaaaccgtgttcgaatcagctggggtatatcaactctcagcctctatactgaagtgggagatatattttctgt |
113 |
Q |
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| T |
46072392 |
atgaagaagatgcaactttaggtattttaaaccgtgttcgaatcagctggggtatatcaactctcagcctctata-----------------ttttctgt |
46072310 |
T |
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| Q |
114 |
taagctgccatatttttcattgtaaataaagatgaaaaatttgtatagattcctttattttgtagatgtgttctgccagttttctttatcaaaaggaata |
213 |
Q |
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| T |
46072309 |
taagctgccatatttttcattgtaaataaagatgaaaaatttgtatagattcctttattttgtagatgtgttctgccagttttctttatcaaaaggaata |
46072210 |
T |
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| Q |
214 |
tcattcaatatttgcatataatttaattaagtttatacactgctatgaatagttcttcaaatctctcggggtatccactgtgcgtgtggatactaatgtt |
313 |
Q |
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| T |
46072209 |
tcattcaatatttgcatataatttaattaattttacacactgctatgaatagttcttcaaatctctcggggtatccactatgcgtgtgggtactaatgtt |
46072110 |
T |
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| Q |
314 |
ggtgcttttctataggtcaaattttagcttacaatcgttggttaaattgaaaaggacacgca-tatctcaatcaaattctcatgattttagc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46072109 |
ggtgcttttctataggtcaaattttagcttacaatcgttggttaaattgaaaaggacacgcattatctcaatcaaattctcatgattttagc |
46072018 |
T |
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