View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6386_low_8 (Length: 391)

Name: NF6386_low_8
Description: NF6386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6386_low_8
NF6386_low_8
[»] chr2 (4 HSPs)
chr2 (18-390)||(43457709-43458081)
chr2 (30-105)||(44223328-44223403)
chr2 (30-101)||(44234150-44234221)
chr2 (30-104)||(44211166-44211240)
[»] chr8 (2 HSPs)
chr8 (19-163)||(4501103-4501247)
chr8 (250-329)||(4500936-4501015)
[»] chr4 (3 HSPs)
chr4 (22-105)||(2886895-2886978)
chr4 (22-105)||(2897398-2897481)
chr4 (22-105)||(2877128-2877211)
[»] chr1 (3 HSPs)
chr1 (20-105)||(2149028-2149113)
chr1 (18-95)||(2161009-2161086)
chr1 (19-131)||(41687800-41687912)


Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 43457709 - 43458081
Alignment:
Q  18 ccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcaccagttacttctcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43457709 ccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcaccagttacttctcta 43457808  T
Q  118 agcaattgtagtctgttatctgttactccttgctctttcatttcctattcaaagttcaaattaaaacttcataggtacatttgatgattcatattgtaga 217  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43457809 agcaattgtagcctattatctgttactccttgctctttcatttcctattcaaagttcaaattaaaacttcataggtacatttgatgattcatattgtaga 43457908  T
Q  218 gtcatatggaaaaaggctatgaggatgatgttcttacagctggcatatcgacatagtaattaacactatcaaaagacattgcaagtggttgaaaaggaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43457909 gtcatatggaaaaaggctatgaggatgatgttcttacagctggcatatcgacatagtaattaacactatcaaaagacattgcaagtggttgaaaaggaag 43458008  T
Q  318 aaccattcctctctttggagcaactccagtggctgactcaagtgttggattatctctactacccattctctgc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43458009 aaccattcctctctttggagcaactccagtggctgactcaagtgttggattatctctactacccattctctgc 43458081  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 44223328 - 44223403
Alignment:
Q  30 aacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacca 105  Q
    ||||||||||| |||||| || ||||||||||| || ||||| ||||| || ||||| || |||||||||||||||    
T  44223328 aacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcacca 44223403  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 44234150 - 44234221
Alignment:
Q  30 aacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgc 101  Q
    ||||||||||| |||||| || ||||||||||| || ||||| |||||||| || || ||||||||||||||    
T  44234150 aacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaatgc 44234221  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 44211166 - 44211240
Alignment:
Q  30 aacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacc 104  Q
    ||||||||||| |||||| || ||||||||||| || ||||| ||||| || ||||| || ||||||||||||||    
T  44211166 aacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcacc 44211240  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 4501247 - 4501103
Alignment:
Q  19 cttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcaccagttacttctctaa 118  Q
    ||||| |||||||||||||| ||||||||||| || || ||||||||||||||||  || || |||||||||||||| || | ||| |||||||| || |    
T  4501247 cttcctgctaaaacatccattaaagttgtcttcccggcaccactaactcccattagtgcagtaagaactccaggcctaaaggaaccggttacttccctta 4501148  T
Q  119 gcaattgtagtctgttatctgttactccttgctctttcatttcct 163  Q
    |||||||||  || |  ||||| ||||| ||||||||||||||||    
T  4501147 gcaattgtaacctatcttctgtcactccctgctctttcatttcct 4501103  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 4501015 - 4500936
Alignment:
Q  250 cttacagctggcatatcgacatagtaattaacactatcaaaagacattgcaagtggttgaaaaggaagaaccattcctct 329  Q
    ||||| || ||||| || ||| ||||||||||||| ||||| ||||||||||||||||| ||||| |||| |||||||||    
T  4501015 cttactgcaggcatgtccacaaagtaattaacactctcaaaggacattgcaagtggttggaaaggtagaatcattcctct 4500936  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 2886978 - 2886895
Alignment:
Q  22 ccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacca 105  Q
    ||||| ||||||||||| ||||| || || ||||||||||||||||||||||| || || ||||| |||||||| |||||||||    
T  2886978 ccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcacca 2886895  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 2897398 - 2897481
Alignment:
Q  22 ccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacca 105  Q
    ||||| ||||||||||| ||||| || || ||||||||||||||||||||||| || || ||||| |||||||| |||||||||    
T  2897398 ccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacaccaggcctaaatgcacca 2897481  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 2877211 - 2877128
Alignment:
Q  22 ccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacca 105  Q
    ||||| || |||||||||||||| || || |||||||||||||| ||||| ||||| || ||||| ||||| || |||||||||    
T  2877211 ccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcacca 2877128  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 2149028 - 2149113
Alignment:
Q  20 ttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacca 105  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| ||||| ||||| |||||||| || || ||||||    
T  2149028 ttccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctgttagtactccaggtctaaaagcacca 2149113  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 2161009 - 2161086
Alignment:
Q  18 ccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcct 95  Q
    ||||||||||||||||||||| | ||| |||||||| || ||||| || ||||| ||||| ||||| |||||||||||    
T  2161009 ccttccagctaaaacatccattagagtagtctttccggcaccacttacacccatcaaagcagttagtactccaggcct 2161086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 41687800 - 41687912
Alignment:
Q  19 cttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcaccagttacttctctaa 118  Q
    |||||||| | ||||||||| |  || || |||||||| ||| | || || | ||| |||||||| |||||||||||||| |||||| |||| ||||| |    
T  41687800 cttccagcaagaacatccattagtgtggtttttccagcaccagttacaccaactaatgccgttagtactccaggcctgaaagcaccacttacatctctta 41687899  T
Q  119 gcaattgtagtct 131  Q
    | ||||| |||||    
T  41687900 gtaattggagtct 41687912  T

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